RNA id: XM_021612984.2


Basic Information

Item Value
RNA id XM_021612984.2
length 3168
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110530141
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54477925 ~ 54485773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATAGCGGAGGGTCGTCCCTAGTTACCACGGTCACAGTCGAAATTATGGCTAAACCCTGCCCagttctacaatttatcttcttgaAATCTGatgttaaccctaaccttaaccacactgctaacatttTGGCTAACGCGAACCTTAAACTAAGACCAAACATCTATTTTTTTGTTTTCATAAATATTTATGATACaaccaattttgactttgtggtttTGGTAAACTAGTGAAACCCTCAGCGGAGTTACACGTGGTCACGTCACGTGCGCCATCACTCAAGATGGCAGCCTCCGTGTGTCGGTGCTATGAGCTGGTCGGAAGACGTCTTCTACTCCTGTCATCCCGTGCTGTCGTCTCCTCATTCAATAGAGGAGATGCCTACAGGATATGTGGGTCTCCGGCTGTCCCTGTGCAGGTGCGGTATGCGTCAGAACGACCTAGTCGTAAAGGCTTTTTCGGGGAGTTTGTGGAGAACCTGAGGCAGGAGTTTGGTAAGGACAAGGAGATGAAGGAGAACATCAAGAAGTTCAGAGAGGAGGCCAAGAGGCTAGAGGAGTCGGATGCCCTGCAACAGGCTCGGAGGAAATTTAAAACCATTGAGTCTGAAACCGTTAAGACCTCTGAGGTGTTCAAGAAGACCTTTGGGACTCTGTCTGAAACTGTGAAGGAGGGCCTTGAGGAGGTGACCCGTACAGACCTGGGGAAGAAAAtcaaggagggggtggaggaggcaGCCAAGACTGCCAGGCACTCAGTTGAGTCTGTGTCCAAGGGGGGAGAGAAGCTGGGAGTGACCAGCGCCTTCAGGGCCATCTCACAGGGGATGGAGTCAGTGAAGAGAGAGATTGATGTGGTGGACGATGGTACTTACAGGGCTCCTTCTCAACTCAGGAAGAGGAGGGAATTCTCCTCCAAGGGAGGGGAGAGCGACAACCGAGTGTTTGAGGCCAACGAAGAGGACATGGGTGTTGTGCTGCACAAGGATTCTAAGTGGTACACACAGTGGAAGGACTttaaagacaacaacatggttTTCAACAggtTCTTTGAGATGAAAATGAAGTATGACGAGAGTGACAACGCCCTTGTCAGAGCATCTCGAGCCGTGACCGACAGAGTCACCGATCTActagGTGGTCTCTTCTCTACCACGGAGATGTCTCAGGTGCTGACGGAGATCTTAAAGGCAGATCCCAGCTTCGACAAGGACTCCTTTCTCAAACAGTGTGAGAAGGACATCATCCCCAACATCCTAGAGGCTATGATCCGCGGGGAGCTCGAGATGCTGAAAGACTGGTGCTATGAAGCCaCATACAGTCAGCTGGCCCACCCCATCCAGCAGGCCAGGGCCCTGGGTCTAATGTTCCAGTCCAAGGTCCTAGATATTGACAACGTAGATttactctttcatctctgtctctcagttGGCGATGGGGAAGCTCATGGATCAAGGCCCCGTGTTGATCATCACCTTCCAGGCCCAGGTGGTCATGGTGATTCGTAGTCCCAAGGGAGACCTGGTGGAAGGAGATCCGgaGAAGGTGTTGAGGATGATGTACGTGTGGGCTCTGTGTCGGGACCAGGAGGAGCTCAACCCCGACGCGGCCTGGAGCCTACTGGACATGTCTGCCTCCAGCACCGAGCAGGCTCTTTGAGAGAATGGGACCCGACAAAGGGACGCTcccgggacacacacacacatccaggatCTACACACACAAGCCAGTGTACACCGCAACATCACACACATCCAGGAGCCACACTGTATGTCAAGAGGACGTGGCGGCATGTCACTTTCCAGATGCGTACTAGAGTGGTGTGTTTGTGGTTAGTCCTCATGGCGCAGATGGGATCttctactggtgtgtgtgtgtgtgtggtcttaggAACGAAATGGAGTGTGTACGGACACGAAGTGAAAGGACAGTTTGCTTTCAGTTGTGcacccactctttctattctgtttagagcAAGTTTGCTTTCTGTGAAGGTTTGCTTTCtgtagtacacagctttgtacgagatcttcagtttcttggctatttcttacatggaatagctttcatttctcagaacaagaatagactgacgaatttcagaagaaagttctttgtttctggccattttgagcctgtaatcgaacccacaaatgcggatgttccagatactcaactagtctaaagaaggccagttttattgcttctttaattagcacaacagttttcagttgtgctaacgtaattgcaaaatggttttctaatgatcaattagccttttaaaatgataaacttggattagctaacacaacgtgccattggaacacaggagtgatgggtgCTGATAATGGGCGTCGGTATGGCTATGTAGATATTCcgtaaaaaaatctgccattttcgagttacaatagtcatttacaacattaacaatgtctacactatttctgaccaatttgatgttgttttaatggacaaaaaatgagcttttctttcaaaaacaaggacatttgttaGAATGTTTTATGCTTTTTACGGGAAGACAAACTGAAGATAAATAGGATATCTATGTATGTTTAAAGATCCATCGTGTCACGTGTCCAAATACTCATGGCAGTTCAGACTAACTGTTAAATATGTCAAACTGCTTCATTGCAAGCTAGGGTGGGACCACAGTCAGGCTTGTCGTAAGGCAGCTACTTTTTCAGCTGAACCTCATAGACATTGCACTGATGTTCTCAGTACTTCCAGATGTACTTATATGGTACTGTATGAGAGACTGCCTGCAACGGGTATGTATATGGCTGTTTTTAGatgtaaaaaaaattacattACACGTTTATTTTTTGTCTGTATTACACGGTTTTCACATCAGGAAACTGGAATACTGGTAACTGAAAGGGTTATTTTTGTTAACCATAACTCAATAACAGAAAATAATATTTCAGGGAGTGTTGTAGCTAACTGATTCGAGTATTTCATTCAGAGTTGGTTCTAGCATGGGGGAAATGTGATATCTCATGACAAAGGGCAATATCATATTTCAGCCGTCTATATAGATAACATGTAAATCTAATGCTCTGAGATGGACTATTCATCAAAACAAGGACCATCATTCTAACAAAAATATGGTTTAATGTGGTGAGCTCTAGATTAAAGGATATAAACCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU821364 lncRNA downstream 8494 54468905 ~ 54469431 (-) True G722978
TU821332 lncRNA downstream 72012 54404615 ~ 54405913 (-) True G722949
TU821281 lncRNA downstream 146150 54330765 ~ 54331775 (-) True G722906
TU821229 lncRNA downstream 200886 54276769 ~ 54277039 (-) True G722862
TU821230 lncRNA downstream 204870 54272776 ~ 54273055 (-) True G722863
TU821376 lncRNA upstream 24390 54510163 ~ 54510508 (-) True G722990
TU821379 lncRNA upstream 27572 54513345 ~ 54514044 (-) True G722993
TU821383 lncRNA upstream 32045 54517818 ~ 54518410 (-) True G722997
TU821405 lncRNA upstream 71687 54557460 ~ 54557689 (-) True G723017
TU821414 lncRNA upstream 79918 54565691 ~ 54617283 (-) False G723025
XM_021612982.2 mRNA downstream 12209 54446219 ~ 54465716 (-) True LOC110530140
XM_021612981.2 mRNA downstream 32703 54443130 ~ 54445222 (-) True LOC110530139
XM_021612975.2 mRNA downstream 100351 54374233 ~ 54377574 (-) True LOC110530134
XM_021612960.2 mRNA downstream 346186 54127068 ~ 54131739 (-) True LOC110530126
XM_021612959.2 mRNA downstream 372515 54058122 ~ 54105410 (-) True LOC110530125
XM_036985696.1 mRNA upstream 12590 54498363 ~ 54505427 (-) False LOC110530142
XM_021612986.2 mRNA upstream 12590 54498363 ~ 54507484 (-) False LOC110530142
XM_021612988.2 mRNA upstream 12590 54498363 ~ 54507488 (-) False LOC110530142
XR_005052906.1 mRNA upstream 13190 54498963 ~ 54507488 (-) True LOC110530142
XM_036985700.1 mRNA upstream 213060 54698833 ~ 54777061 (-) False LOC110530144
TU821231 other downstream 195947 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 226379 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 338584 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 549966 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 621860 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 891508 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 910851 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 1149765 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 1299744 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 1634430 56120203 ~ 56128288 (-) False G724943

Expression Profile