RNA id: XM_036985696.1


Basic Information

Item Value
RNA id XM_036985696.1
length 1461
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC110530142
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54498363 ~ 54507488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacctcatgaagctggttgagaatgccaagagtgtgcaaagctgccatcaggGCAAAGGTTGCCCAACAGTgggaggagaggtgtgtgactGACTCCTTGACTGCTGGCTCCTCTGGCATTTCACCACCACcaacagagccatgactacatcaGGCTGCTGCCACCTGCCTGGCTCCCTGTGTGACTACTCAGGCAGCGCCGACCTGCCCAAGGTGGTAGAGGAGCCAGATGCTGGCCAGGCCCAGTACGTCGCTAAGGTTACGGCCAAAGATGGTCGCTCACTCTCCACTGTTGTCAAAGCTGTGGGCTCACAGAGTAATGAAGGCATGTGTCGTATCTGCCACGAGGGGGCCGGTGGTGAGACGCTGCTCTCCCCTTGCGACTGCACAGGGACCCTGGGTAAGGTGCACAAGAGCTGCCTGGAGAAGTGGCTGTCGTCCTCCAACACCAGTTACTGTGAGCTCTGCCACACAGAGTTCACTGTTGAACGGCGACCCCAGCCCCTCACACAGTGGTTGCGGGACCCGGGGCCTCGCAGTGAGAAGCGCACGCTGCTGTGCGACATGGCCTGCTTCCTGCTCATCACGCCACTGGCGGCCATCTCAGGCTGGCTGTGTCTGAGGGGAGCCCAGGACCACCTGACCCTCAACAGCCGGTTGGAGGCCGTGGGACTCATTGCCCTCACCATCGCCCTCTTCACCATCTACATCCTCTGGACACTGGTATCGTTCCGCTATCACTGTCAGTTATACTCCGAGTGGAGGAGGACCAATCAGAAAGTGCGCCTGCTAATGCCCGACATAAAAGGAGTGCACTCCACTCAACATTCCGTGCCGACGAAGTCAACCAAGAAAATGACTGACGAGACCATCGTATGAGCACAGAGCGACGTGTTCTCGCAAATAAAGTGTTACATAACTCGAACTTCTGCGCTCTTAAGGACCATTCTGGGGGATTCTTTTTCCATATTCACTTTTGAAGCACTTGAGCCCATTTAAGCACTATAACCATTTTGATTTGGGGATTTTTTGGACTCGTAGAAGGACGTGTCACTGATGTCATCGCCGGATTATGAACACTGGACTGGAGCATAAGGTGACAGCCAATAGCGGATACTGATGCAGCATGTTAATACAGTAACATActacctacccccccccccccccccccccgtcacaaTGTATTTAGCTTTTTTTGGACAACTGCCATCCAATAGACTCGTGAATTTACTCAGAACAACCATGTGAACGACCATGTTTAAATATGAAGTTCTCTGTTTAAGaaaaaatcttttccctttttgaAGCTGGTAGAAgttgggaggagagagtgggCTTTGGTGTCAGTCAATGTATGCAAAAGTATTTGATGTAATTTTAGTCTTCCTGTTGGACTCCTTTTGAGTAAGCTGGGTCATTGTGGAATAAAATATAAGGGACTCTTGTCACCGTGCAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU821364 lncRNA downstream 28932 54468905 ~ 54469431 (-) True G722978
TU821332 lncRNA downstream 92450 54404615 ~ 54405913 (-) True G722949
TU821281 lncRNA downstream 166588 54330765 ~ 54331775 (-) True G722906
TU821229 lncRNA downstream 221324 54276769 ~ 54277039 (-) True G722862
TU821230 lncRNA downstream 225308 54272776 ~ 54273055 (-) True G722863
TU821376 lncRNA upstream 4736 54510163 ~ 54510508 (-) True G722990
TU821379 lncRNA upstream 7918 54513345 ~ 54514044 (-) True G722993
TU821383 lncRNA upstream 12391 54517818 ~ 54518410 (-) True G722997
TU821405 lncRNA upstream 52033 54557460 ~ 54557689 (-) True G723017
TU821414 lncRNA upstream 60264 54565691 ~ 54617283 (-) False G723025
XM_021612984.2 mRNA downstream 12590 54477925 ~ 54485773 (-) True LOC110530141
XM_021612983.2 mRNA downstream 12592 54477925 ~ 54485771 (-) False LOC110530141
XM_036985695.1 mRNA downstream 12930 54477925 ~ 54485433 (-) False LOC110530141
XM_021612982.2 mRNA downstream 32647 54446219 ~ 54465716 (-) True LOC110530140
XM_021612981.2 mRNA downstream 53141 54443130 ~ 54445222 (-) True LOC110530139
XM_036985700.1 mRNA upstream 193406 54698833 ~ 54777061 (-) False LOC110530144
XM_021612991.2 mRNA upstream 193406 54698833 ~ 54975146 (-) False LOC110530144
XM_021612992.2 mRNA upstream 196063 54701490 ~ 54975146 (-) True LOC110530144
XM_036985705.1 mRNA upstream 569053 55074480 ~ 55084365 (-) False LOC110530149
XM_036985706.1 mRNA upstream 569053 55074480 ~ 55084365 (-) False LOC110530149
TU821231 other downstream 216385 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 246817 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 359022 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 570404 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 642298 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 871854 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 891197 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 1130111 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 1280090 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 1614776 56120203 ~ 56128288 (-) False G724943

Expression Profile