RNA id: XM_021613003.2


Basic Information

Item Value
RNA id XM_021613003.2
length 2915
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110530155
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55154678 ~ 55180780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggggggtgttgttgaTGCGGATGAGTAGAAGCTGAATAGAAGCATTTCCCACACGAGAAACGGGGTAAAGGCAAAAAGAGGCCACCAAACCCCTACGTCGCCCCCGGTGACAACTCCTCACATTCCGCTGGGTCTTCGCCCGTTATTCGCGAAGCCTGCAATGGGCTACAGACGAAAGCGGCTTCATAACGAGTTTTTTTTGTCCGCAGATCCTCTTGCTGCAGCTGTCCTTCCGAGAGCCAGGAGGACAGTCTCGCGTGTATATTTCAAGACAGCGGGCCTAGTTTTTCCTTCGCTCTTCACTTCATTGTGGCTATATTCGGCTGAGTAAATCCTGGGAATACATTGACCATTTAAATCCAATTAGATATATTTATAGCAGTTCTGACATCAGACATTTATATGGTGGACGTTTTTTATTGTCCCATTGAACGGATATAATGGAGTGAATTGCACGAGGGGAGCGAGAGTCAGTAGTTTTCTTGCGTGTGATGATAGGAGACACAATGACGCTGTTGTCTCTTTTGGGTCGGATCATGCGTTATTTCCTCCTGAGGCCAGAGACATTGTTTCTGCTATGCATTAGCTTGGCCTTATGGAGTTACTTCTTCCACACGGACGAGGTGAAGACCATCGTCAAGTCTAGCCGGGATGCGGTGAAGATGGTGAAGGGGAAAGTGGCGGAGATAATGCAGAACGACAGGTTGGGGGGCCTGAGCGTCCTAGACGCGGAGTTCTCCAAAACCTGGGAGTTCAAAAATAACAATGTAGCTGTGTACTCCATTCAGGGGCGGCGTGACCACATGGAGGACCGCTTCGAGGTGCTCACGGACATCACCAACAAGAGTCATCCGTCTATATTCGGGATATTTGACGGTCACGGTGGTGAGgctgcaGCTGACTTCGTGAAGGCCCACTTGCCAGAGTCTCTGAGGCAGCAGCTGCTGTCCTATgacagggagaagagggagggcgTTCTCTCCTACCACAGCATCCTGGAGCAGCGCATCCTGGCTGTGGACCGAGACATGGTGGACAAGCTCTCCGCCAATCATGACGAAGCAGGCACTACATGTCTGGTGGCCCTGCTATCAGACCGGGAGCTAACAGTGGCCAACGTTGGGGACTCGCGGGGCGTGCTGTGTGACAAGGATGGGAATGCGGTGGCCCTGTCACATGACCACAAGCCCTACCAGCTCAAAGAGCGCAAGAGGATCAAGAGGGCAGGGGGCTTCATAAGCTTCAACGGTTCATGGCGAGTCCAGGGCATCCTGGCCATGTCTCGATCGCTGGGCGACTACCCCCTGAAGAACCTCAACGTGGTCATCCCCGATCCTGACGTgttgacctttgacctggacaAGCTGCAGCCCGAGTTCATGATCCTGGCGTCGGACGGCCTGTGGGACGCCTTCAGCAACGAGGAGGCGGTGCGCTTTGTGCGCGAGCGCCTGGACGAGCCGCACTACGGTGCCAAGAGCATTGTGCTGCAGTCCTTTTACCGCGGCTGCCCAGACAACATCACTGTCATGGTGGTCAAGTTCAAGAGTGGTCCCGTGGGGAGCAGGGCTGGGGAGTAGAGATGGTGATGAGGTCACGATGTCATGATAGGGTCATCATTATTGTTGGATTGTCTCTTCTCCCTTGTTGATAGTGTAGCAAGCTATCAACCTGGGGAGGATTGGGAACTGTCGCAACCTGGATACCTGGCATTCTCTTTGACACGCACGTACCCCTACACCCAAAACTATTCGTTTTCATTTCTGACCATAACTTTTGGATAGATACACATTTTTGTTTGATATATGGATTTTACTCTGAAGCTGGAGTGCTAGATCgtcctgacacacacacctccGTCTCACACGTTGGCATTCAGCATGAACACTAATCTCATCCATTCAACCTTTACTGACACACAACTGGAGATCACCCCTTCTGCATCAATGAGAAGATGACTCTCTGACTCAACCAGCACTGCATACTgtgatctactgttctctaccaacaaacaacagcagtcaaaggacagacaatgtcctgaagagaaaaaaaaagaaaaaaagtacCTTTTGGGACTTTTATTGTTGTGGAATGATAAGCCCTTATATCAGCCCATAAAAATGCTGTAAGTTCCTTGGTCGTATACAGGATCAAACCCTGACTTAGCTCCAGCCATTGCCTTTTTTTGTTAACACAGTCTTAACCAGGCTGATGTATAGTTACTCTATTATGGTACTGGACCTGTATAGGATATTTGTTTAGCCTATCCATGTTTGGGAAAGATCTGTGAATGTTAGCACACAGGTGTTGGTGCTTCCGTCGGAGTCGACTGATTCAAAGGCTACACAGCTGAGACAGGAAGGCTAATTGCCAGTAATATGCAATATGATTGGAGTGAATACTGATGTGTCAATAAGGCCAGGATCATGTTAGAGACCAAGGATGGCCAACTTTGCTCcagaagtagcagcagtgtgtgcaGGGTTTCATTCCAGcccagcacacctgattcaaagaGTTTTAAGTAATAAAGACTGCACACACGGGTTATCCAGGAACAGTTGGCCACCCTTGTGTTagttttactactgtactactgtattgaATACTAAAATTACTACTGTATTTCATAGGTACATTTTATGCTTGAAATTGTGGCAAGCCTTTTATAATTTAACAATGTACCTTATTTGCCTTATTTGTTGTTTCCGTTTTAATATTATTGCCAAAACAAAACATatacagctgtttattgttgacCTTTACACATGCATAAGTCGATGATGTAACAACAAGCGTCGCTTGTAGACAGCTCACCTACAAGTCACTCGTATACTCTGCCAAACACAAAATGTACGACTTTGCTGAATACAGTCTGTCAGTATTAAAATTCAATGCTACCTTGTGAAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17506 PPM1L, PP2CE; protein phosphatase 1L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822267 lncRNA downstream 13844 55139311 ~ 55140834 (-) True G723814
TU822252 lncRNA downstream 37631 55116822 ~ 55117047 (-) True G723801
TU822249 lncRNA downstream 46696 55107464 ~ 55107982 (-) True G723798
TU822248 lncRNA downstream 47792 55106643 ~ 55106886 (-) True G723797
TU822227 lncRNA downstream 48646 55102967 ~ 55106032 (-) True G723780
TU822296 lncRNA upstream 4847 55185627 ~ 55186127 (-) True G723843
TU822297 lncRNA upstream 5781 55186561 ~ 55186880 (-) True G723844
TU822310 lncRNA upstream 37316 55218096 ~ 55220955 (-) True LOC110530159
TU822347 lncRNA upstream 76882 55257662 ~ 55273903 (-) True G723891
TU822418 lncRNA upstream 197310 55378090 ~ 55378339 (-) True G723956
XM_021613000.2 mRNA downstream 64958 55085968 ~ 55089720 (-) False LOC110530150
XM_036985707.1 mRNA downstream 70161 55074480 ~ 55084517 (-) True LOC110530149
XM_021612999.2 mRNA downstream 70303 55074480 ~ 55084375 (-) False LOC110530149
XM_036985706.1 mRNA downstream 70313 55074480 ~ 55084365 (-) False LOC110530149
XM_021613007.2 mRNA upstream 22903 55203683 ~ 55209485 (-) False LOC110530157
XM_036985714.1 mRNA upstream 22903 55203683 ~ 55209504 (-) False LOC110530157
XM_021613006.2 mRNA upstream 22903 55203683 ~ 55210842 (-) False LOC110530157
XM_036985715.1 mRNA upstream 22903 55203683 ~ 55211103 (-) True LOC110530157
XR_005052912.1 mRNA upstream 30970 55211750 ~ 55214733 (-) True LOC118965529
TU821231 other downstream 872700 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 903132 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1015337 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 1226719 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 1298613 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 196501 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 215844 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 454758 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 604737 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 939423 56120203 ~ 56128288 (-) False G724943

Expression Profile