RNA id: XR_005052912.1


Basic Information

Item Value
RNA id XR_005052912.1
length 542
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC118965529
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55211750 ~ 55214733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTGGCCCAGCTTCGGGAAGCCTCCTCTGTGCAGAgtctggagaggagagtggagcgTTCAACCATTCTGGGAGGGGTGCCCGTGCCTTAAAGCCTAGCACccaggTGTGTATGTGGAGCAGGTAGGGGACGGTTCCTGGGCGCTGGGGATGAGATCCTGGAGGTGAACGGGGAGGCAGTGGCTGGACTGACCCTGGATCAGGTGTCAGGTCTCATGACCCGCAACAGCACCGCCTCTATCCATATATCCTGCCACTCCGTCGAAACCAGCGATGAGCAATGCAATACTGCAATATTCTATTATCCATTTCAATAAATTAAAAAACACTGGACACTGCCCTGTGATGATGTCATGACGAAAACACGAGAATGGAAATAAGCAAGCATAATGAGAGATTTGTTTAACTCTGGGAGAACCAAAGGAAGGACATAATCAACCTAATTATATTTGTCCATTATTAGGCCTAGTCTTTGAAGATTCAGGCAAATGTAAGTACTGGTAAATCCAAACTGATGTCAAATAAAACAGAGGAGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822297 lncRNA downstream 24870 55186561 ~ 55186880 (-) True G723844
TU822296 lncRNA downstream 25623 55185627 ~ 55186127 (-) True G723843
TU822267 lncRNA downstream 70916 55139311 ~ 55140834 (-) True G723814
TU822252 lncRNA downstream 94703 55116822 ~ 55117047 (-) True G723801
TU822249 lncRNA downstream 103768 55107464 ~ 55107982 (-) True G723798
TU822310 lncRNA upstream 3363 55218096 ~ 55220955 (-) True LOC110530159
TU822347 lncRNA upstream 42929 55257662 ~ 55273903 (-) True G723891
TU822418 lncRNA upstream 163357 55378090 ~ 55378339 (-) True G723956
TU822430 lncRNA upstream 184316 55399049 ~ 55399513 (-) True G723967
TU822432 lncRNA upstream 187879 55402612 ~ 55403050 (-) True G723969
XM_036985715.1 mRNA downstream 647 55203683 ~ 55211103 (-) True LOC110530157
XM_021613006.2 mRNA downstream 908 55203683 ~ 55210842 (-) False LOC110530157
XM_036985714.1 mRNA downstream 2246 55203683 ~ 55209504 (-) False LOC110530157
XM_021613007.2 mRNA downstream 2265 55203683 ~ 55209485 (-) False LOC110530157
XM_021613003.2 mRNA downstream 30970 55154678 ~ 55180780 (-) True LOC110530155
XR_005052911.1 mRNA upstream 3238 55217971 ~ 55223328 (-) False LOC110530159
XM_021613011.2 mRNA upstream 89947 55304680 ~ 55313604 (-) True LOC110530161
XM_021613016.2 mRNA upstream 120879 55335612 ~ 55337587 (-) False LOC110530163
XM_021613014.2 mRNA upstream 120879 55335612 ~ 55337598 (-) True LOC110530163
XM_036985719.1 mRNA upstream 208933 55423666 ~ 55456049 (-) False si:ch211-106h4.4
TU821231 other downstream 929772 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 960204 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1072409 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 1283791 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 1355685 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 162548 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 181891 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 420805 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 570784 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 905470 56120203 ~ 56128288 (-) False G724943

Expression Profile