RNA id: XR_005052911.1


Basic Information

Item Value
RNA id XR_005052911.1
length 2322
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110530159
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55217971 ~ 55223328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCCAGAGAGGAAGCGGTAGCGGCCCATGTCGGTGGAAAATATGTGTCCCTCCAAGTAGGTGGCGTTTTTCGCCTACCAAGCAATGCTTTTTTGTATGGAGATCAATGAGAGTTTCGAATTTGGTCCCAAAAAAAGGAATGGGTTATTTTctacgtgaggcttatttgattgaatagaCGTTTCTTAATGCTGGTTGTTACACGAGTAATACACGTGACATCCccgcaactttgagaaaaacatTTATATCAGAGTTGGCATGGCGATTTATATTAATGACTGAGACTAGTAGCATAGCATCGCTCTCCGTTGAATACagcaatgttgcgattgtttgtgagaatgccagcaggtgtggttcccgtgggggaaaAATTCTATTGGGTGAAAGTTTCCGGTGGAGGTTGCCATGGatgccaagaaggggagtgaggaacACCACAGGGGCACaaatgttaaataaaacacccaacgtttaatgaaaatcatcaaaaagtatattgtgtgttcagatgccctgtgtggacaaagtcatggaactttatgacaatcagattaaattaactacattttcAGAGAGAAAACGTGTAAATGGTCGAATTGGACCGATTCACAAGTTTTCTTCAAGGGTGGTGGATTACATCTGTCCGGCTAATGGAGGTGCAAATCACACAAATATCGCCTTCTGCCAGCTCTTCGCATTGGACAAAAGCCTCTGATGACCGGGGCTTCCTCCTGAGCCTTGTCCTCGAGCCTGGCacactctctgcctcctctcccttacattccccctcctccccctctgctccAGGCTCTGCCGTCCATGACCTGCAGTCCAAGGTGAAGGCACTCTCCCAGAAATCCAgcgggagatagagaaagagcgaGTGGGAGGACAAGAGGGCCTTAGAGCTCCAGGCAGGGGGGCCTGTCTCGTCCCAGGCAGAAGGCCCGCAGTAGGGGGAGGTGCCACTGCCCGTGCCCTCCCGGTGCTTTGACCAAAGGAGGAGGTCCAGCAGTAGTGAAGACGATGTGGTGCAGAAGATGGTGGCCAGGGTACAGCTCAACACCTACCTGACTGAACcacagagggagcaggagagcagGGGTACCATGGGGAAGGGggcagagaagggggagaggggaggcctGGCTGGATGTGTGCCAGGGCAGCCTCGTGGGTTCGGGGAGGGGGCCAGCTTGGAGAGCTTGGACAACATCCAGTCGGACAGCACCGGCGGAAAGATGGAGGACCCCCCTCCTTCTCCAAAACCTGCTTCTTCGTCCTCCTCtgcctcatcttcctcctcatctccctcctctcacagACACTGGGCACCCCCTAAAGGCTTCTGCAGGGTGGCACGCTCAGAGACTCTGAACGGAGTAGCCACTCAGTCTACCGTAGGCACTCAGACTACGATGCCCATAGCCTCGTCATTTGTATCTCTGAAGGACAAACCCCCTGTTAATGCCACCCTCTCAAGGACAAGGACAAGGGCTGTTGGGACATGCTATGTTCGGACAGCCTGCACTGCTACccggagaggggaagagaaaggtgCCGTGGACATCCTGTACCTGTGTGTCGACCAGATAGACAACAGAGATGGCATGATCATGAAGTTCCAGTGAAGATATGAAATGTTGGTACGCCTTGTTGTAAGACAAGTCTGGGTACTTGGAGAAGTTAACTGAAAAAGATAGATACTAAATTCCCCTTGCTGACCGCTCATGGTTGAAGAACATGGTACATGGTAGCACGTGTGCTGTGGGACAGAGTGTTCATCAAGAGTGTGGGAGTGTCTCTAGAGACATCTGCCTTTGCGGGACCATGAGTGGGATTCAGCCATTCTACAACAAGTGCTGCCCCGCTCAAAGACAACCCTGATCCCAAATCATCCCAAGAAACTATTCAAGTATCCCACAGGGTGATTGCGCCCTCTCCTGGCAATGATTGGTCACACGTCAACCCTGACAAAATTCCCCTGAGCCCCAGACACGAGTGGGCCATGCTACTGCTGGAGAAGGCTTGGTTAAAAGCACACTTCAATCACGCCAAAGGGGAACGCCCCCCAACCCGCCGTGCCCATTCTGCCCAGATATATAACCCGTAAGCCAGCTGTGCCCTGCTGTCAATCAACTGTATTTGTTCCTTTGTCGATCTCTATCAACACCCTCTTCTGTTCACCTGTCTGACTACCTGTatcttttgagaagtgtaacttgtTCCAAAAAACccttttgatttatttcacaaaatgtttacattctgtcataaagagcacatgtttaacataataaaaaaacatGCTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822297 lncRNA downstream 31091 55186561 ~ 55186880 (-) True G723844
TU822296 lncRNA downstream 31844 55185627 ~ 55186127 (-) True G723843
TU822267 lncRNA downstream 77137 55139311 ~ 55140834 (-) True G723814
TU822252 lncRNA downstream 100924 55116822 ~ 55117047 (-) True G723801
TU822249 lncRNA downstream 109989 55107464 ~ 55107982 (-) True G723798
TU822347 lncRNA upstream 34334 55257662 ~ 55273903 (-) True G723891
TU822418 lncRNA upstream 154762 55378090 ~ 55378339 (-) True G723956
TU822430 lncRNA upstream 175721 55399049 ~ 55399513 (-) True G723967
TU822432 lncRNA upstream 179284 55402612 ~ 55403050 (-) True G723969
TU822433 lncRNA upstream 181216 55404544 ~ 55404942 (-) True G723970
XR_005052912.1 mRNA downstream 3238 55211750 ~ 55214733 (-) True LOC118965529
XM_036985715.1 mRNA downstream 6868 55203683 ~ 55211103 (-) True LOC110530157
XM_021613006.2 mRNA downstream 7129 55203683 ~ 55210842 (-) False LOC110530157
XM_036985714.1 mRNA downstream 8467 55203683 ~ 55209504 (-) False LOC110530157
XM_021613007.2 mRNA downstream 8486 55203683 ~ 55209485 (-) False LOC110530157
XM_021613011.2 mRNA upstream 81352 55304680 ~ 55313604 (-) True LOC110530161
XM_021613016.2 mRNA upstream 112284 55335612 ~ 55337587 (-) False LOC110530163
XM_021613014.2 mRNA upstream 112284 55335612 ~ 55337598 (-) True LOC110530163
XM_036985719.1 mRNA upstream 200338 55423666 ~ 55456049 (-) False si:ch211-106h4.4
XM_036985720.1 mRNA upstream 204396 55427724 ~ 55456052 (-) True si:ch211-106h4.4
TU821231 other downstream 935993 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 966425 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1078630 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 1290012 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 1361906 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 153953 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 173296 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 412210 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 562189 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 896875 56120203 ~ 56128288 (-) False G724943

Expression Profile