RNA id: XM_036985719.1


Basic Information

Item Value
RNA id XM_036985719.1
length 7591
RNA type mRNA
GC content 0.55
exon number 50
gene id si:ch211-106h4.4
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55423666 ~ 55456052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAACGATCAGTTCAATCAGTTCCTTGGATGGGATGATAAAGTTTATACCAGTCAGGCAGTTTTCTGAAGCCTCACATTCCTTTTCTTTCTTTTCTGTATTTATTGTATTGTTTCCATGGTTTGTTCAACATGAGAAGATTGGTTCTCCTATCAGTCTTTTTGATCCTAGTTTCCTGTTGTCCTGAGAGCGACTTCCTGTGTGCGTCTGGCAAATGTGTCCCAGTTGATGATGTCTGTGATTTCAAGGACGACTGTGACGATGGTTCCGACGAGGAGTTCTGTGGGTCGTGTGATTTTGAGCGCCACTCCTGTGGATGGAACGACAGCAGTGTGGGAGTGTACCGCTGGAGTCTGGAGAGGGCTAACATCAGCCTGATTCCTGGACAGGACCACACCACGGGATCACCCTGGGGTCATGTTATGCATGTGGAAGGAGACTCAGCAACACACTTTGGCAGGGCCGTGTTGTTGCATTCCGTTGACCAACCAATGGCTTTGGGATGCCATATAAGCTTCTGGTACCACCTCTATGATGACTTTAGTGCGTCCGCTCGGATGTATCTGAAGATTATCCGAAACACTGGGAGCACAGAATTACTGATGATCTCCAAGCCACAGCAGACTAGAGGATGGGAGAATGCTACGGCCTTCATCGGTAATCAACCAGGAGGTTTCAAGTTGGAGTTTTCTGTGGACCCCTCATCCCTTGGAGCTCAGGACATCATGCTGGATGATATCAGCTTTGAGAGCTGTGGGGAAGGGGACATACCTGCAGGCTCCCAACTCCTCACCTGTGACTTTGAGAAGGACACCTGTGCCTGGTACCCAGACCACACTGTTTCCCTGCtgtggaagagagaaagaggaatagacCACACTACTGGCAGTGGTTATTTCATGTCCATTAACCCCGGCAGTAAGCTGGACCCCTCATCAACAGCCAGACTCATCAGCTACCCTCAGCCAGCAGGCACAGTCATCTGTGTTAGTTTCTGGTATCGCATGTACGGCAGTGATATTGGCTCCGTGAGGTTCCTCACCAAGTCAACCAGAGAGCCAGAGACTGTTGTGTGGATGAGACATGGGACTCAGGGGAACAAGTGGCGCTTTACAGACCTTACCTTCACCACTGACACCCCACTACAGTTCATATTGGAGGCTGTGGTGGGTGGTAAGCAAGGTAGCATTGTCATAGACGACATAGTagtgagcagcagcagcaatgtGAATGGCTCCTGTCCGGCGGAGAGAGAGTGCACCTTCCAGGGGTCCTTGTGTGGCCTGCAGGTGGAGATGTCTGGAGACTTCACCTGGAACAGAACCACCGGGGCCCTGGGAGCCAACACCTCCAGCCCAGCGCTGGATCACACTCTGGGTACTGAACTGGGATACTACCTGAGTGCCCAGCTGTGGAACCACCACGTGGGTAGCAGGGGGCGTATGATAACGGGGGTGAACGATGCCACCCCTCGCAGTGGAGAGTGCTGGATGTTTTGGTACCACATGGAGGGCAGGGCCTCAGGGGAGCTCAACATCTTTCTGCAGCCCTTCCCAGGCTCCAGGACCCAGACCCTACTGTGGAGCAGGACTGGAGACCAGGGAGATCGCTGGAGACACGGCCGAACTACGGTCCTCAGCCCTGATATACATTACCAGGTCATCTTTGAGGCTGTGGCCGGGGATGGCCGGGAGGGGGATATTGCCATTGATGACCTCACCCTTGTTAATGGGCCGTGTCCACCACAAGggTTCTGTGACTTTGAGATGGACTACTGTGGCTGGCTGAACAGTCCCCCAGCTGTGTCAGGAGTGGACTGGGAATGGTGGTCAGGGTCCAGTGGAGGGCGCTTCTCTCCAACTGTGGACCATACCACCAACTCTGGCCAGGGACACTACATCATCTTCTCGACAGGTGTATTTTCCTCTGGACTGGAGATTACCCAGCTGCAGAGTGAACCTATGGCGGCGGTAGAGAATGCATGTATAGAGTTCTGGTACTTCATGGACATGTGGGGAGCCATGGACCAGATGGAGCTGACAGTCTATGTGAACGAGACGGGTGTTCTACGTTCGATATGGAGCAGATTTGGTCAACTCGACCCAATCTGGTATCAGGCCATGGTGGACTACAACGCTACAGGACCACACCAGATCATATTTTCTACCAGGCGCCCCGGCAGCGAAGACGGAGGAATAGCCCTGGATGACATCCACGTTAGGATGAACCTGACCTGTGCAGAGCTGATCCCAACCACTTCAGCCCCCACCACAGTACCCACCACCCCTCCAGCCACTCCTATGGACTGCACCTTTGAACATGGCCTGTGTAACTGTGTCCAGGAGACCGATGACGCCTTCGACTGGGTCCACTCCCAAGGCCTGCAGGTGGACCAGCCATGGAATGGACCGCTGTACGACCACACGGTCGGAAATGACAAAGggtttTACCTGATGGTGAATATGTCTGGTAGCGTGGACGGTGAGACCGCGGTCGTCTCTGTTCCTCTTCCGTTCCAAACCACGGACCTCTGCGTTGGCTTCTGGTATTACATGTTGGGACCCTCTGTGTCCAACCTGGACCTCTTAGTGCAGACGAAAACATCAAGAACTGTGGTGTGGACTCGCCAAGGCAGCCAGGATTCAGAGTGGATGAATGCACAGGTTCAACTCGGCATAGTAGACACACAGGAGGTTCAGTTCTCTGGAAGCAGGAATACCTCTGGCAGTGGGTTTATAGCCATCGATGATGTCACAGTCAAGGAAGGGGCCTGCAAAGATCAACATCCGTGTGGATTTGAGGTAGACTCCTGGTGTGACTTTGAGGTAGACGTGAGTCACAAGGGGCGCTGGGGCCGTTTGAGAGGCAGGAAGGACCGACTGGACCACACCTACAGAACTGAGAATGGTTTCTATCTGACTGTGTTGAAACGGAACTCCGAAGAGATCGAGGTGGCTCAGTTGCTTTCTTCAGAGCTAAGCTCTACCACAGGGATGTGTGTTCGTTTCTGGTACTGGCTGCCTGCTGGCTCCACTGACCTTCTGTCAGTGCATGTCCTGAGGAGCGAGGAGCAGGGCCTGGCTCTGTGGCAGCGTTCTGGAGCTTCCTCTACAGGCTGGGAGGTGGCAGAACTCACTGTGTCCGCCCCTAACACCTTTAAGGTGGTTTTCAGAGCAGAGCACGCGCCGGGCTCTGATTCGACGGTGCAGATTGATGACGTGTCTATGAGGGAAGGAGCCTGTACTCCCACGGGCAGCTGTGACTTTGAGTCTGGCCAGTGTACCTGGGTCAACGAGGCCCGGACAAGCGGACACGACTGGGTACAGGCAGACGGACGCTTCCATGGCCCAGACACTGACCACACCAGTCAGACACCAGAGGGGAGGTTTTTGCTGAGCCCGGCCCTGCCACAGAACCAGAGCAGTCGGGCCGTGGTGGTCTCCGAGTGGATCCGGTCTCAGACTGAAGCCACCTGCCTTACCATCTGGTACCACATGAATGGCAGTGAGTCTGGGGCCCTGCGCGTGTTTGAGCGCTCTGGTCCAACAAAACAAGAGTTACTGTTTGAGACCCAGTCTGGGGGATCCAACTGGACCCGTTTTTCTGGCTCTGTGGAGAAGTCCGGCCCATTCCAGgTGCTGATAGACGCAGAATCTGGAGACCGTGGATTTATTGCTGTTGATGACATCATTCTAACGCCAGGGCTTTGTCCAGACAATGGGACCAGCGGCGACTTTGTGGGGTGCTCCTTTGAGAACGGCACCTGTGATTGGGCGGATGTCAGTGTGGGCCAGTTTACCTGGCAGCGGGGCAGGAATGGCACTACCGCGGAAAACACTGGCCCGTCACTAGACCACACCCTGGGCACTGAGctggGCTGGTACATGGCGGTGGAGTCTAGCCGTGGGGATGTGGACAGCTTTGCAGCGCTGCAGAGTCCCACCATGAAGCAGGCCAGTGCTGTGTGCTTGCTGGAGTTCTACTACCACATGTATGGAACAGGTGTAGGGGAACTCCGTGTGCTTCTTCAGGAGGGTTCCAGGACCACTCCTCTGTGGTGGCGGTCGGGGGACCAGGGGGACGCGTGGCGTCGGGGGGAGGTGATCGTGGGTCGTACCCCCCATGTGTTCACCCTGTTCTTCCAGGCGACCAGGACCTTCAGTCAGCTAGGGGACATCGCCATTGACGACATCCTCTTCCTCAACTGTAGTCTGCCTGAGCCCCAGGACTCCTGTCCAGCTGGAGTGTTCACCTGctctaaccgtgtgtgtgtggcgcAGAGCCGAGTGTGTGACTACACCGACGACTGTGGGGATGGGACTGACGAGGCCGACTGTGAGAAGCAGGGTTACGAAGGGCACTGCAGCTTTGAGCAGGGCCTGTGCTCCTGGGAGGAGAGTGAGGTGGACACCCCCGGGGCTGACTGGACCTTCCAGAAGGGAGAGAGCGCCTGGCCTCAACACGGGCCGCCGAGGGACCACACCAAAAACAATGGAGCAGGGCACTATGTGATTCCCGGGAGCCACCTGACTGAGAAGGGCCAGACATCAGAGCTGCTTTCCAGCACTCTGCTACCCAGCTCCAACTGCACCGTGAGGTTCTTCTACTACAGTCAGGATGAGGAGACGGCCAGTCTGACTATGAGGCTGAGGACAGACCAGGATGGGGCTGATGACACTGTGCTGTGGACCAGAGACTCATCACAGGACTACAGCTGGCACAGGGCAGAGGTCATACTGTTCATACCGGTCAACAGCAAGATTGTATTCCAGTATAAGAGAGGAGATAACCACATTGGTCTGGTTGCAGTTGACGACGTTTCCTTCTTCAAGGAGTGTGTCCACGACCCTAACAACAGCCAGCTGCCAGTCAACCcaccttcctctgtccctccaaCTAATCCGGCCACACCCACTCCCTCAGACCTTCCCACAACTGAAACCACACCCACTTCCTCAGTCCCTCCCACCACCAGTCCCTGTACATTTGAGAGTGACCAGTGTCTGTGGAGTGACACCAGCGAGGGCGTCAACAGATGGCAGAGACAGGAAGCCGGAAACCACACAGTACCAGAGACGGACCACACGACTGGCACAGGCTACTACATGGCAGTCAATTTCAGCCAGTCCCAAATCGAAGCTCGTCTCCAGAGTCCCGCCCTCCCATCCTTGTCCCCCTACTGCCAGATACTGTTTCACTTCCAGATGCGCGGTAAAAGTGTAGGGTCTCTGACTGTTCTTCTGCAGGAGGCTGGGGGCAAAGAGGTAGCACTATGGTCACGCACACTCACCACCGCCCCCCAGTGGAGACCAGAGCACCTGCCCCTAGGTCAACATCTGCAGCCCTACAAGGTAGTGTTCAGAAGCTTGGCCGGGGAGAGCCTCTCAGATGTCTCCCGTGCTGTTGCTCTGGACGATATATCCTTCATCAACTGTGACACATCCTACCAGCCACCAGCCCTGTCTGCATATGACTGTTCCTTCGAGAGGGACCTGTGTGGCTGGATGCGGGGGGCAGAGGAGGAACAGGACTGGCAGGTGAAGTCTGGTCCTACAGACACCCCAAACACTGGGCCTGCTGGggaccacaccaccaccactgGGTATTACCTGTACATCGAGAGCTCTGCTCCGAGCACCGTTGGTAGTGTTGCTCAGCTGAAGTCCCAGTTGCTGCCCCCTGCAGGGCCCCAGGGGTACTGCCTCTCTTTCTGGTACCACATGTTTGGGCCCACTGTAGGATCACTCAGGATGGTGCTACACACCACACAGTCCCGGCTAGGAACACTGGTGTGGTACAGGGGTCGCACTCAGGGGGATGAGTGGCGGCTGGCCCAGAGTCATGTGACCTTACACGAAGTCCACTTGGTGGCATTGGAGGCCTCGGTGGGCGGGGAGGCAGGGGACATCGCCATCGATGACATCACCTTCACCGCGGGACCCTGTGCCCCATCAGACCTGTGTGACTTCGAGGAGAGCAGTTGTAACTGGCTTCAGCAGGCTGATGATGACGGTGACTGGGTCAGGGGGTCCGGGTccacacctaaccctaacacggGTCCGGACTACGACCACACCACCAACACCGCCACTGGACACTACTTCTACCTGCCCTCATCGGGGGTTGACCAGCCTGGACAGACAGCCAGGATGGCCTCCCCACTTTTCCCTGCAGGTAAAGGGGTGTGTCTTCAGCTGTGGTACCACATGTCCGGGAGGGGCATGGGGACGCTGAATGTGTACCAGTGGAGTGAACAAGGGGGCATGGTAATGCTGCTGTCCCACTCAGGGGACCAGGGGGCTCTGTGGAGGTTTGCCCAGGCAACGCTGCAGCTGGACAGGGACGATTACAGGATCATTGTGGAGGGGGTGAAGGGGAGCAGTGATGAGGGAGACATGGCCTTTGATGACATCCTGGTGACCAAcagcccctgtcctccccctggaCGCTGTGACTTCCAGACCAACCTGTGTGGCTGGACGAACGTGGCCATGGCAGGGGTGGATGAGGGGGACTGGCTGAGGGGCAGAGGGGCCTCACCAAACCCTAACACTGGGCCCAGTGTGGACCACACCACCAACTCCTCCCTAGGTTACTACCTGTATGTGGACAGTTCTGTTGGCCAATGGGGAGACAGATCCATGCTGGTCAGTGAGATACTGCAGGCGGACAGCGGGGGTTACTGTCTGACTTTCTGGTTTCACATGTATGGCCCTCACATCGGGACCCTCAACCTCTACCGCAATGACAGGAAACAGCATGCTACTGGAGGTGCTGCTGATGTCTTGTGGACAGAGTCAGGCAGCCAGGGAGACGTGTGGTTGGAGGGCAGCGTATACGTGGATTATACACAGCCATTCTGGTTTGTGTTCATGTACTGGAGGGGCCGGGCCCCCGGCGGTGACGTGGCTCTCGATGACATCACCATCCATCCTGGTCACTGCTACAACACCGTACCCACGGACACTCCAACTCCAGATAATTCGTGGGCCGTGTGGTTGGGAGTGGCTCTCTCTCTGCTGGCGGTGGCTGTCATCGCCGCTGTTCTCTTTGTCCTCCCACGGAAACGCTCCACCAACCTGCCTGAACCTCTGGAAAATGTCCACGTTTTCGATCTGAGCAGCGGTTTAGAAGTCGGAAGGGAATCTGAGCTGTCATTCTTCAACACCTTGTATGATCCCTCTTCAGACCCTGCAGAGTTCAGAGGGGTTAACTCTGATGCTTGAGGAGGGATATCTCTGAACCGTTCTCATAACTGTTCTCATGAGCTCATAACAACACAAAGTTACGATATACACTAAGGGAGAgcggttgaaaattagctggCCGGCTAAAACCATCCCTTTTACAGAAacattgattaatgtgcactatccctgtaaaaaaaatgtaataaactcAAACACTACTAAGAACAGTGTCAACTGAAGTGTATAAGCTACAGTTTGTATCGAACAGTATTCATATTATAGCCTTAGGAAAGCTCgattgatatacagtaccagtcaaaagtttggagacacctacctactcattcaagggtttttctttattttttcatattttttacattgtagattacagtaatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822434 lncRNA downstream 17787 55405307 ~ 55405879 (-) True G723971
TU822433 lncRNA downstream 18724 55404544 ~ 55404942 (-) True G723970
TU822432 lncRNA downstream 20616 55402612 ~ 55403050 (-) True G723969
TU822430 lncRNA downstream 24153 55399049 ~ 55399513 (-) True G723967
TU822418 lncRNA downstream 45327 55378090 ~ 55378339 (-) True G723956
TU822491 lncRNA upstream 43417 55499466 ~ 55499860 (-) True G724020
TU822513 lncRNA upstream 54289 55510338 ~ 55510564 (-) True G724042
TU822733 lncRNA upstream 89685 55545734 ~ 55545995 (-) True G724245
TU822734 lncRNA upstream 90798 55546847 ~ 55547117 (-) True G724246
TU822754 lncRNA upstream 119010 55575059 ~ 55575687 (-) True G724264
XM_021613014.2 mRNA downstream 86068 55335612 ~ 55337598 (-) True LOC110530163
XM_021613016.2 mRNA downstream 86079 55335612 ~ 55337587 (-) False LOC110530163
XM_021613011.2 mRNA downstream 110062 55304680 ~ 55313604 (-) True LOC110530161
XR_005052911.1 mRNA downstream 200338 55217971 ~ 55223328 (-) False LOC110530159
XR_005052912.1 mRNA downstream 208933 55211750 ~ 55214733 (-) True LOC118965529
XM_036985721.1 mRNA upstream 5147 55461196 ~ 55468070 (-) True LOC110530166
XM_021613024.2 mRNA upstream 77567 55533616 ~ 55544134 (-) False odr4
XM_021613026.2 mRNA upstream 77571 55533620 ~ 55543988 (-) False odr4
XM_021613025.2 mRNA upstream 77571 55533620 ~ 55544106 (-) True odr4
XM_036986877.1 mRNA upstream 99829 55555878 ~ 55564099 (-) True LOC118965626
TU822429 other downstream 26781 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 45890 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1141688 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1172120 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1284325 54124379 ~ 54139341 (-) True G722761
TU822777 other upstream 179489 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 329468 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 664154 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 763467 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 918604 56374653 ~ 56386516 (-) False LOC110530186

Expression Profile