RNA id: XM_036985721.1


Basic Information

Item Value
RNA id XM_036985721.1
length 1480
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110530166
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55461196 ~ 55468070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATCAACCACTAGAAAGCGCCCTCTATGCGGAAGTGAAGCTGTCAGTGCGAGACAGGAAATTAAACCAGGAATTATTTTACTGTAAAAGGAGCACAGACCTATTGCAGTATTCTTCTTTAAACAACAAACCATATCGTCAAAATGTCGAAAAATACTGATTCGAACCAATTCAGGAAGGTGGACGTTGACGAGTACGACGAGAACAAATTTGTGGATGATGAGGATAATGGAGAGAGTCAGGTCGGTCCAGATGAAGCAGAAGTGGATTCGCTGATCAGACAAGGCAACCTGATGGAAGCGCTGCAGGCTGTGCTGAAGAATCCTCCAATCAACACCAAAAACCAAAATGTTAAGGATCGTGCTGAGGCCCTGGTGCTTAAAGTGCTGAGCGCCTTCAAGAGTAGTGACATTGAGAAGgctgttcagtctctggataagaaCGGCGTTGACCTGCTCATGAAGTACATCTACAAGGGTTTTGAGAAGCCTTCTGAAAACAGCAGTGCTACACTGCTGCTGTGGCACGAAAAGgcTCTCTCTGCAGGAGGAGTGGGCTCCATCGTGAGAGTGCTCACGGCCAGGAAAACTGTGTAAGGGCTTGTACCggacctgactgactgaccgctGGGACCACTCACTCAGGGGATGTGCTGGCACTGGAAACCCCCCAGGGGGCGTGTGTTCATAACGCGTCTCAAAGCAGGAGCACTGACCTAGGATCAGTCTGGCCTTTTAGATCCTAATGAGTAAGAATACACGGACACTCTTGAGACTCTTTATGAATGTGCGCCCCCCCCAGGACTGGTTTTCTCTCTACGCTTGAAGGAAGCTCGCAGACATCGGACAGCCTGTCTCAAACGGCCCCTTCGTAGTCCTAAAATGCTTAACGATATTCCATCGGAATCCAACGTTTGtcaaaatgttgttgttgttgttgtcaacgAAGTTGAGAAATACTTATATTGTAAGATTTCCGTCATCGTAACGTCGTAAGGATGACATGTGCTATTGTGTCATTTTCCTAGATAAATATTGCGCTATCGTCATGGTGGGTAGGATGGCACCGTCAATTAAGCTTTCACGCCCTCTTAATGCAGAGACCAGTTTGTGTGCGATTACGCTGGAACAagttaacctggtcccagatctgtttgtcatCTATAGCCAACTCCACTGGGCATGAATAATATACAGCACTAACAGATCTAGGGCCAAGCTAGGAACGAGCCCTTTGGAATGTAGTGATGGAGTGACGTTATCACTATGATCCTGGACACATGTCTCAGAGGGCCTATTTACAAGTATAGAAAAATATCCGAAATGTCTTGGTAGAGTTATTGAGGGAATAGCACGTTCCTTTAGAACAAGTGTACACATTCTGAATCAAATGACCAAAATGCCTTATTGAAAtattcattttttatatatatatgctgtataGGACATTTCTGGATTTAATAAACAAACATCTtacaat

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K05754 ARPC5; actin related protein 2/3 complex, subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822434 lncRNA downstream 55317 55405307 ~ 55405879 (-) True G723971
TU822433 lncRNA downstream 56254 55404544 ~ 55404942 (-) True G723970
TU822432 lncRNA downstream 58146 55402612 ~ 55403050 (-) True G723969
TU822430 lncRNA downstream 61683 55399049 ~ 55399513 (-) True G723967
TU822418 lncRNA downstream 82857 55378090 ~ 55378339 (-) True G723956
TU822491 lncRNA upstream 31396 55499466 ~ 55499860 (-) True G724020
TU822513 lncRNA upstream 42268 55510338 ~ 55510564 (-) True G724042
TU822733 lncRNA upstream 77664 55545734 ~ 55545995 (-) True G724245
TU822734 lncRNA upstream 78777 55546847 ~ 55547117 (-) True G724246
TU822754 lncRNA upstream 106989 55575059 ~ 55575687 (-) True G724264
XM_036985720.1 mRNA downstream 5144 55427724 ~ 55456052 (-) True si:ch211-106h4.4
XM_036985719.1 mRNA downstream 5147 55423666 ~ 55456049 (-) False si:ch211-106h4.4
XM_021613014.2 mRNA downstream 123598 55335612 ~ 55337598 (-) True LOC110530163
XM_021613016.2 mRNA downstream 123609 55335612 ~ 55337587 (-) False LOC110530163
XM_021613011.2 mRNA downstream 147592 55304680 ~ 55313604 (-) True LOC110530161
XM_021613024.2 mRNA upstream 65546 55533616 ~ 55544134 (-) False odr4
XM_021613026.2 mRNA upstream 65550 55533620 ~ 55543988 (-) False odr4
XM_021613025.2 mRNA upstream 65550 55533620 ~ 55544106 (-) True odr4
XM_036986877.1 mRNA upstream 87808 55555878 ~ 55564099 (-) True LOC118965626
XM_021613029.2 mRNA upstream 99773 55567843 ~ 55614934 (-) False LOC110530170
TU822429 other downstream 64311 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 83420 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1179218 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1209650 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1321855 54124379 ~ 54139341 (-) True G722761
TU822777 other upstream 167468 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 317447 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 652133 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 751446 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 906583 56374653 ~ 56386516 (-) False LOC110530186

Expression Profile