RNA id: XM_021613024.2


Basic Information

Item Value
RNA id XM_021613024.2
length 2235
RNA type mRNA
GC content 0.48
exon number 14
gene id odr4
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55533616 ~ 55544134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCAATCATCTTCCTCTGGTGCAGTGACGTAGATTTCAAGCGACGTCACACGTATCAACATTATCTGCTGCTGGAGCTGTTCATGAAGTGAACTCTCACGTCAATCTGTCAGAATGGGCAGAGGCTACATAGTGGAGGATGTGGTGGAGAAATATCTGTCCAATCTCAGTGTACCAGGTGCATCTTGTGTCACAGGACTTCTCATTGGCCAGAGTTCATCCCAGAGAGACTTTGTGGTGCTGGCTGTGAGGACACCTCAGAAGGACACAGAGGGACAGGGGTCTCCGTCAGTCAGCAGGGGAGCTGGGAACTCACTGGAACGCCTGGACGTGGAGTGGGTCACCGAGCATGCCAGACAGGTCTCCCGGATGTTACCGGGAGGTATGTCAGTTATTGGTGTGTTTCTTGTCACCCCACCTGAGCTGTCGAAAGAGGCTCAAAATACATTGAGACGGTTGATCTTTGCGGTGGACAAGCATATATCCAAGGGACGGCTTTGGAGTCTAACAGAGGAGGACGTAACAGAGAAGGTCACACTTCACATCTGCTCCAAAACCAGGAAAGTCGTTTGCAGAACATATGATGTTCGAGATCCCAAGAGTTCTGCCAAGCCTGCTGATTGGAAGTACCAGTCGGGGGTGTGTACTTCCTGGCCATTGTTGACATGCTCAGTGGGACTGAACCTGGTGTTCCCTGTGTTAGAGATGCATGTCTTACCACAGGACATGGAAAAGTGTATGAAGGAGGGACTTCAAACGTGGGCGAAGCAGATTGAAGATGGGCTTTGCCTCATCAATGGCGACGCGATGCCTGGCGAGGTGGAGCTACTGGGGGGGCAGAAAAAGAATGCAAAGGCTGTTCAGCAGACGTTTCGAGCCCAGATCCTCATCCCGATGGCGGAACCCCAATCAGAGCGGAGATTGACGGCGTCTGTGAAGGTGTGCAGTGGGTCTCTCACCCTGAAGGGAATGGTGCAGTGCAGGGCCTACCTCCACAGCAACAAACCCAGAGCCAAGCACGCTACAGAGGTCATCAAGAGAGATGTCATCAACACGGTCTCTAGCAGAGTGGAGATGTTCCTGGAAGATCTTTTAATGGAGGGAGAGGACAAAGGGTCAGTCGGTGTACAGCAGGTGCTCCCTCGCAGAGTGTTTGCCCCCGTGCCCGGaatgagcctgtgtgtgtgtgactacatgTTCCCTGACGAGTGTGTGTCCGATGTGAGTGACCGTCTCAAAGAGATGCTGGACTGGGAGACGCCCGAGGACAGCATAGACACCTCCCAGGAGGCCGTCCCAGAAGCTCCTACGATTGACCTAAAGAACACGGTTGTTCAGAAGAACCTGAAGGCTAAATCTACCCTTGACGCTCGTCCTAAGACACCCTCTGAAGATCCCACTGAAGCCCACAAAAGCCACAAAACATATTACGCTGGTGTTGCCATGGCAGCCGCAATCGCTCTCCTAGCAACAGGCACCTCGCTGATCTACCTGAGCGACTAACGGTGGAGGCAcaggacacagacacaccacGAGAGCTGTTGTTATGCTCAGTGACTTAATCTCTTGATTAAATAGATTTTCATGAAATTGAGTTGACATGGTTATTATAAAAGTATATGCAAGCTGTACGTTTGGTATTGATaattcaacattttatttttcatatGAATTGTAAAGCATAATTGTgtagagagaaaaataaatgaatacagtTCGTTTTGATTTATTTTGTTTCAGTTGTAAAAAGGTTTCACAAAGAAACGTGTGTACAGCGTATGATTTCATGTCGTTCAGAAAGTATGTCTAATGCCATATATTCAAAATTCCCCTCCCATATTATGGGGAAAATGGACCCGCTTTTTGTTGTTCAGTTCATTCAGTCATCAACAGATATTCTGATGTGTGCCAATCATAAACTTTGGGCTCTGTCCTCACATATTGCCTCAGGCCAACCTTAATCGAACTTCTCCTCAACCACAGTGTTGGCACAGCGAACAAAGGACATGTCAGAAGTGCTTAAGAGTGTCTGGATTCAACAtcgttttttttttgcaatgacTTAGGCCTACGGTATGGTCTTGTATGGTTATGCTTGGTATGATGGGCATATTCTATGCTTTGATCCTCCCAAAGGATCGTTCATGCTTGTCCTTAATATCACAAATACTGTATTTTATGTATTCATCTATGACGGAATTGAGCAGAATAAAGAAGTCCGTTCAAAGTAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822513 lncRNA downstream 23052 55510338 ~ 55510564 (-) True G724042
TU822491 lncRNA downstream 33756 55499466 ~ 55499860 (-) True G724020
TU822449 lncRNA downstream 63608 55423054 ~ 55470008 (-) True G723979
TU822434 lncRNA downstream 127737 55405307 ~ 55405879 (-) True G723971
TU822433 lncRNA downstream 128674 55404544 ~ 55404942 (-) True G723970
TU822733 lncRNA upstream 1600 55545734 ~ 55545995 (-) True G724245
TU822734 lncRNA upstream 2713 55546847 ~ 55547117 (-) True G724246
TU822754 lncRNA upstream 30925 55575059 ~ 55575687 (-) True G724264
TU822762 lncRNA upstream 44354 55588488 ~ 55589616 (-) True G724272
TU822856 lncRNA upstream 173730 55717864 ~ 55718713 (-) True G724366
XM_036985721.1 mRNA downstream 65546 55461196 ~ 55468070 (-) True LOC110530166
XM_036985720.1 mRNA downstream 77564 55427724 ~ 55456052 (-) True si:ch211-106h4.4
XM_036985719.1 mRNA downstream 77567 55423666 ~ 55456049 (-) False si:ch211-106h4.4
XM_021613014.2 mRNA downstream 196018 55335612 ~ 55337598 (-) True LOC110530163
XM_021613016.2 mRNA downstream 196029 55335612 ~ 55337587 (-) False LOC110530163
XM_036986877.1 mRNA upstream 11744 55555878 ~ 55564099 (-) True LOC118965626
XM_021613029.2 mRNA upstream 23709 55567843 ~ 55614934 (-) False LOC110530170
XM_021613030.2 mRNA upstream 23709 55567843 ~ 55614934 (-) True LOC110530170
XM_036985723.1 mRNA upstream 139491 55683625 ~ 55688982 (-) False LOC110530171
XM_036985724.1 mRNA upstream 139491 55683625 ~ 55688982 (-) False LOC110530171
TU822429 other downstream 136731 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 155840 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1251638 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1282070 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1394275 54124379 ~ 54139341 (-) True G722761
TU822777 other upstream 91404 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 241383 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 576069 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 675382 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 830519 56374653 ~ 56386516 (-) False LOC110530186

Expression Profile