RNA id: XM_021613030.2


Basic Information

Item Value
RNA id XM_021613030.2
length 2077
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110530170
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55567843 ~ 55614934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGCGCGAACTATCAACATCTGTCGCTGTATTTGGTGGGCGATGGCTTTGCATGGTGTATCTGTGTCGGCAGATTAAGCAAATAACGTTATCATTTTGGAGAATCCCATTTTTTCAGCCACCCACTCCACTTGGCCCCTCTGTGTGGTAGTCCAACCAGGCAACTGAGAAGAGAATAATTCAAGCCGGGAACGGCGTTCACAGAGATGCTGCTCTGACGGCTAAACAAGAACATCCATCGTTGAGAGAAAAAACGGACGAAAATAATAACTCCCATACAGTTATGGATAATAATGAATCGTGTCTACATCTAAGTCTCCCACCTGAGCTCCACCCCCTCACAGCCCCTTAGTATCATGGTGGGCCCCCCtcaccctcaccaccaccacccccatcaccatcaccacccctCCGTCATCAGCACCACCGTCAACCCCGGGCGGCCCCACCCATCCCCCATAAGCACCCTGGGCTCGCCATTCAATGGGCTGGGCGGCTCGCCGTACTCCGTCATCACGTCGTCCTCTCTGGGCTCGCCAGGTGTCTCCATGCCCCACACGCCCACCATAGGCTTCAGCACGCTCTCCAGCCCACAGGTAAACTCTCTGAACAGTGTGAGCAGCAGTGAGGACATCAAGCCTCCTCCAGGCCTGGCTGGACTGGGTCACATGAACAGCTACGGCTGCATGAGCCCAGGGTCCATGTCCAAGCACATCTGTGCCATCTGTGGGGACCGATCCTCAGGGAAACACTATGCCGTGTACAGCTGTGAAGGCTGTAAAGGCTTCTTCAAAAGAACCATCAGGAAGGACCTCACTTACACGTGTCGAGACAGCAAGGAGTGCCTGATCGATAAGCGCCAACGCAACCGCTGCCAATACTGTCGCTACCAGAAGTGTCTGGCCATGGGCATgaagagagaagCTGTGCAGGAGGAGCGTCAGCGGGGCCGTGACAAGAGTGATAACGAGGTGGAGTCAACCAGTAGTTTCAACGGGGACATGCCTGTCGAGAAGATATTGGACGCGGAGTTGGCCATCGAACCCAAGACTGAAGCTTACATGGAGGCCAGCACAGGCAACTCTACGAACGACCCGGTCACCAACATCTGCCAGGCAGCAGACAAGCAGCTATTCACCCTGGTGGAGTGGGCCAAAAGGATCCCCCACTTCTCTGAGCTGCCCCTGGACGACCAGGTCATCTTATTACGAGCAGgctgGAATGAGCTGCTCATCGCCTCGTTCTCCCATCGCTCTGTGACAGTGAAGGACGGGATCCTCCTGGCCACGGGCCTCCACGTCCACCGCAGCAGCGCCCACAGCGCAGGAGTGGGCTCCATCTTTGACAGAGTGCTGACGGAGCTGGTGTCTAAGATGAAAGACATGCAGATGGACAAGACTGAGCTGGGCTGCCTCCGAGCCATCGTCCTCTTCAACCCAGATGCCAAGGGCCTGTCTAATCCTACAGAGGTGGAGGCCCTGAGAGAGAAGGTGTACGCCTCGCTGGAGTCCTACACTAAACATAGATACCCAGAGCAGCCTGGCAGATTTGCCAAGCTGTTGCTGCGTCTGCCTGCACTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACCTCTTCTTCTTCAAGCTGATAGGAGATACGCCCATAGACACGTTCCTCATGGAAATGCTTGAAGCGCCGCACCAGATCACATGACACGAGTTGTATCCATTGTAAATACCCCCTGAACCCAATTCCCAGATCCCCTACCCTTACCCCAGAGTGCAACTGCTATGAAATCAAACTTGAGAGTTCTTAACTTGCATATTTTGTACCAACCACAATTAATAATGTGAAAATAAAACGTTCCTATTGGTATTTTAAGAAAATGCAACACTGTAAAAAGTGAATTCTAaagaacaattttttttttttgtaaatagaaGAGTATTAATTATCAGATCTAGCAACAACTGAATGCAACATGAAGTCTTATTTTATTCAGTGATGAATAGTATGAAATACAATGTCACTAGCATAGAATGTCTGTGGGAATAAAATACAAAAGACGACTTTGAACGTGATGTCCGGTCAAGTCA

Function

GO: NA

KEGG:

id description
K08524 RXRA, NR2B1; retinoid X receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822734 lncRNA downstream 20726 55546847 ~ 55547117 (-) True G724246
TU822733 lncRNA downstream 21848 55545734 ~ 55545995 (-) True G724245
TU822513 lncRNA downstream 57279 55510338 ~ 55510564 (-) True G724042
TU822491 lncRNA downstream 67983 55499466 ~ 55499860 (-) True G724020
TU822449 lncRNA downstream 97835 55423054 ~ 55470008 (-) True G723979
TU822856 lncRNA upstream 102930 55717864 ~ 55718713 (-) True G724366
TU822860 lncRNA upstream 106150 55721084 ~ 55721324 (-) True G724370
TU822861 lncRNA upstream 107169 55722103 ~ 55722418 (-) True G724371
TU822862 lncRNA upstream 108043 55722977 ~ 55723486 (-) True G724372
TU822863 lncRNA upstream 109083 55724017 ~ 55724208 (-) True G724373
XM_036986877.1 mRNA downstream 3744 55555878 ~ 55564099 (-) True LOC118965626
XM_021613024.2 mRNA downstream 23709 55533616 ~ 55544134 (-) False odr4
XM_021613025.2 mRNA downstream 23737 55533620 ~ 55544106 (-) True odr4
XM_021613026.2 mRNA downstream 23855 55533620 ~ 55543988 (-) False odr4
XM_036985721.1 mRNA downstream 99773 55461196 ~ 55468070 (-) True LOC110530166
XM_036985723.1 mRNA upstream 68691 55683625 ~ 55688982 (-) False LOC110530171
XM_036985724.1 mRNA upstream 68691 55683625 ~ 55688982 (-) False LOC110530171
XM_036985726.1 mRNA upstream 68691 55683625 ~ 55688983 (-) False LOC110530171
XM_036985725.1 mRNA upstream 68691 55683625 ~ 55688984 (-) True LOC110530171
XM_036985738.1 mRNA upstream 115500 55730434 ~ 55763921 (-) False LOC110530174
TU822429 other downstream 170958 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 190067 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1285865 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1316297 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1428502 54124379 ~ 54139341 (-) True G722761
TU822777 other upstream 20604 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 170583 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 505269 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 604582 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 759719 56374653 ~ 56386516 (-) False LOC110530186

Expression Profile