RNA id: XM_036985725.1


Basic Information

Item Value
RNA id XM_036985725.1
length 2877
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110530171
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55683625 ~ 55688984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAACCAACCATGTTCATTCACCTCCAACTATCAACAGGGATCATACCTATCACTTACAGCGAAGGCAACACAATGCTTTTCACCTGAGAGGATTCAAAATTAATTTCGGATTAATTTCTATTGAAAGATCACAGACATTTACTTTAACCATGGACATTTTCTTATAAAATGTGGATATTTCAAACTAGTTGATTTCTTTTAGAATTCGCTGCAGATCGTTTCAAAGGTATACTTTTTTGATTGGCAACGTTTCAACTGGGCACCAGGTAATTTAGATGATGATGTCTAGGTTGCAGCTATTGCTCCTGTTGTGGTGCGCCATCGCCCTCACTTGGGCACCAGTCGCATCCAGCGATGTGATGGAGAACTCTTTGACAGATGTCCATGATGGAATTAAAGAGCAACTAGAACAGACCGAGGGACCACTTCTGGATGATGAGATGGACAACCAGGAGAACGTTTTAACTCAGCTGCTGGGGgattatgacaaagtgaaaacgctGTCCGAAGGCTCAGACTGTCGCTGTAAATGTATTGTCAGACCCCTGAGCAGAAGTGCCTGCAGGCGGATAGAGGAGGGTGCAGCAAAGGCTGAGGACTTTTACACCGTGGAGACTGTGACATCAGGGCCTAACTGTAAAAAGTGTGCGTGTATAGCCCCGCCCTCTGCTCTGAATCCCTGCGAGGGAGATTACAGGTTCAAGAAGCTGCAGGAGGCGGGGAAAGATGACATCAAGCTCTCAACAATAATGGAGTTGCTGGAAGGAGCGTTTTACGGGATGGATCTGTTAAAGTTACACTCAGTTACAACTAAACTTCTCAGGAGGGTTGACAATATAGAAACGACCTTTTCTCGTAACCACACGGAGAAGGAGAAAGTGAGTGTGAGGAGCCGCTCTAgtgaggagaatgagagagagaaggagagaagagcaCAGCAGAGGATGGAAAAGAGAAAACGTCTAACTGAGCTGGAGCCGTCCCTGCAGAAGGATACGGCTGCAGCCTATACTAACACAGAGAAGTATGAGGAGCGCTACGTGGGGGCCAAGGGCCAGGGGGCCACCAGGCCCATGCTGAAGAGGAGCCAgccagaggacagggaggagcCCCAGTGGCCCCTGAAAGGCAAGGTGGGGCCCAACGGCATGGTCATCAGAGGGGTGACCTTCTACAAGGCCAACACAGTGGACGATGGAGccgctgaagagctcaCAGCAGAGGAAGCCCTGAGCGGTGATGGTTCCATGGACCTGCTCATCGATGACCAGCTACTGAGACCCACCCAGCCCAGGCCTGTGGCAGGCCCCCCGACATCTGCATCCCAAGACAGGAAGGGGAACCCAGATGACCAGGCCACTGACACCCCCAAAACAGCCACTAGTCCCCAAAGGAATCCCATTACATCTGCCCCTGGAGCTACCGAGACACCATCAACCACTGTTTCCATCCcgaccaccaccaccattcaaACAAACACTAACACACCGGTTGCGACCACCACAGCCATCATTCAACCAGCgactaccacaaccaccactcaACCAGCGACCACTAGAAAACTTGAAACCTTGTATGTTTTGACCACGTCTCCAACCACTGCACTGCAAAATGTCAACAGCACCACAGCTCCGACCAGCAAGGTGACTAGTGTGCCCAGACCCAAGCATCACATCAGCTGGACAGAGGGCCACTCAGAGGTTCCCTCGGCGACCCCTAAAGTCCCTGGCCTGTGCAAAGACACTTTGGCCACCATCTCTGACCCAGTGACCCATAATACCTACGGCCGGAAGGAAGGTGCCTGGATGAAGGACCCGAAGGGCAACGGAAATGTAATCTATGTCACCAACTACTACTATGGCAACAACCTACTGGAATTCCGTGACATGGACACCTTCAAAAAAGGACGCTTCACCAATTCCTACAAGCTGCCGTACAACTGGATAGGCACCGGCCACGTCGTATACAACGGAGCCTTCTACTACAACCGGGCCTTCTCCCGTGACATCATCAAGTTTGACTTGCGTCTACGCTACGTTGCGGCCTGGACAACGCTGCACGACGCAGTgttcgaggaggaggaggactccTCCTGGAGGTGGCGAGGACACTCGGACATCGACTTTGGGGTGGACGAGAGCGGCCTGTGGTTGGTGTACCCTGCGCTGGACGAGGAGGGCTTCCACCAGGAAGTAATCATGCTAAACCGTGTGAACCCGGCTGACCTCAGCCTCCAGAGTACGTTCAGAACAGGCCTGAGGAGACACTTCTACGGAAACTCCTTTGTCATCTGTGGCGTCCTGTACGCGGTGGACAACTATGAGCGTATCCACGCCAATATATCCTACGCctttgacacgcacacacacacccaaatgaTCCCCAGATTACCGTTCACGAACAACTACACGTACACGACGCAAATCGACTACAACCCCAAGGACAAAAAGCTGTATGCATGGGACAATGGTCACCAGGTGACATACGATGTTATATTTGCATATTAAAAGCTGTGCAGTAGTGCTAAAATAAAAAGGGACCAGCACTTTTTTTGTataaaagttaaaaaaaatatatataaaaaaatggtcTTAGTGGATTGTAGAGCAGTCTACATGGCCTTTATGTGTCGTACTGTATAATCCACATGTATGTTGTTCCAGGCTCCCGTGTTGTCCCAGCGCATGTTGTTGTATTTTATATAATGGTCATGGTCTTTTAACTGCCCAAAGGGCAGCAAGCAAGATCATTCAGCGAAGCAAGACAAGGTATTTTCTTACTGCTTGTTAGAAGTTTAAAGTGTATGTTGTATATACTTCAATGAAAAACTGTTAATAAAATATGCATTCAAACATGAATGCTGACACACAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822762 lncRNA downstream 94009 55588488 ~ 55589616 (-) True G724272
TU822754 lncRNA downstream 107938 55575059 ~ 55575687 (-) True G724264
TU822734 lncRNA downstream 136508 55546847 ~ 55547117 (-) True G724246
TU822733 lncRNA downstream 137630 55545734 ~ 55545995 (-) True G724245
TU822513 lncRNA downstream 173061 55510338 ~ 55510564 (-) True G724042
TU822856 lncRNA upstream 28880 55717864 ~ 55718713 (-) True G724366
TU822860 lncRNA upstream 32100 55721084 ~ 55721324 (-) True G724370
TU822861 lncRNA upstream 33119 55722103 ~ 55722418 (-) True G724371
TU822862 lncRNA upstream 33993 55722977 ~ 55723486 (-) True G724372
TU822863 lncRNA upstream 35033 55724017 ~ 55724208 (-) True G724373
XM_021613029.2 mRNA downstream 68691 55567843 ~ 55614934 (-) False LOC110530170
XM_021613030.2 mRNA downstream 68691 55567843 ~ 55614934 (-) True LOC110530170
XM_036986877.1 mRNA downstream 119526 55555878 ~ 55564099 (-) True LOC118965626
XM_021613025.2 mRNA downstream 139519 55533620 ~ 55544106 (-) True odr4
XM_021613026.2 mRNA downstream 139637 55533620 ~ 55543988 (-) False odr4
XM_036985738.1 mRNA upstream 41450 55730434 ~ 55763921 (-) False LOC110530174
XM_021613036.2 mRNA upstream 41450 55730434 ~ 55764053 (-) False LOC110530174
XM_021613037.2 mRNA upstream 41450 55730434 ~ 55764053 (-) True LOC110530174
XM_021613040.2 mRNA upstream 80442 55769426 ~ 55774173 (-) False LOC110530175
XM_021613039.2 mRNA upstream 81364 55770348 ~ 55774173 (-) True LOC110530175
TU822777 other downstream 37611 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 286740 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 305849 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1401647 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1432079 54251114 ~ 54251546 (-) True G722854
TU822909 other upstream 96533 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 431219 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 530532 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 685669 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 694145 56383129 ~ 56386516 (-) True LOC110530186

Expression Profile