RNA id: XM_021613036.2


Basic Information

Item Value
RNA id XM_021613036.2
length 5503
RNA type mRNA
GC content 0.55
exon number 34
gene id LOC110530174
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55730434 ~ 55764053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGGGGTAAAGGTTCATGCAACATTGATACGTCCCCCTCAGATGCGAAGCCTCTTCTTCAAACTAGGGGGTCTCGAGAACTAAAATTCCAAAGCATCATCCCCTGTACAGTAAAGGGCGTCCTATATAGGGAAAGTCAAAATGTCCCTCCAGGCGAAACAAGTCAGAGTCCTGGTCCTCAGAGATATGGAACAGCTGGGAAGGACACTCTTCCGCCTGGACCAAGGCTTTGAGCTCCAGTTCCGTCTGGGCCCTACTCTCCAGGGGAAACATGTGCGCGTGCAGACTAACTACCCCGCCCCAGGGGAACACTTTGACCGTCACACCTTCCGGGCCCTGGACTGGCACAACCCCACGGGAAGAGAGGACGACTCTGACAAGTTCTGCTCCCTAGACCTACAGATCGCTGGATCGTACCAATACAACTTTGGTCACGGCCACGAGGAGAAGTCAGGCGGTGGCTACGTGGTGGTGGACCCAGTGCTGCGTGCCGGAGCTGACAACCACCACGTCCATCTGGATTGTATCACCATCCAGACCTACCTGTCCAAATGCCTCGGGCACCTGGATGACTGGCCAGACAGACTGAGGGTGGCTAAGGAGTCTGGCTACAACATGATCCACTTTACGCCTCTGCAGACGCTCGGTAAATCCAGGTCCTGCTATTCTCTAGCTGACCAACTAAGCCTGAACCCAGAGTTTTCGCCACCGGGAAAGAACTACACCTGGACAGATGTGGGAGAGTTGGTGCAGAAACTGAAGAAAGAGTGGAACATGATCTGTATCACTGATGTGGTCTACAATCACACAGCCACCAACAGCCCATGGATCAAGGAGCACCCTGAGTGTGGCTACAACCTGGTCAACTCCCCCCACCTGAGGCCAGCCTGGGTCCTGGACCGGGCCATATGGCACATGACCTGCAACATGGCTGATGCCAAGTACGCTGCTAACGGCCTTCCCGCCCAGGTCCAGAATGAGGGGCACCTCAATgcaATCCGCGATGTTCTGTGGGGGCAGGTCTTCCCCAAGATCAAGCTGTGGGAGTTCTTCCAGGTCAGAATCGAAAGCGCTGTGGAGGAGTTCAGGGACCTGCTTGCAGATGGAGAGAAACCAGACCAGAAGAAGACTGGGGGTAAACAGGGACTGAAGATCATTCAAGACCCCAAGTTCCGACGCTTCGGAAACGAAGTGGATATGGACTCTGCCCTGGAGACCTTTGTGCCTCACAGCCACAGTACACAAGCCATTCTGGAGGCCTGTAACAGGCTGTGGGGGAGACTTGAGGAGATCAATAAAGAGCAGTACCAACAGATGATACAGCACCAGGAGAAGGCCTCTaactgcattgtgggaaatgtagtttaTGAGCGCCTTGCTGACCATGGACCCAAACTGGGCCCCGTCACCAGGAAAGACCCTATTGTTCCCAGATACTTCACCTTTCCGTTCGAGGAGACGAGCCTGGAGGATGACCTGAAGATGACGGACCAGCCAGACAAGGCCTGTCACTTCCTGGCTCACAATGGCTGGGTGATGGGAGACGACCCTCTTAGAAACTTTGCCGAGCCTGGCTCCAACGTGTACATCAGGAGAGAGCTGATCTGCTGGGGCGACAGCGTCAAGCTTCGCTATGGCGACAAGCCCGACGACTGCCCCTACCTGTGGACCCACATGCAGAAGTACACAGAGATCACAGCCAAGCACTTCGCGGGAGTCCGCCTGGACAACTGTCACTCCACCCCCCTGCACGTGGCTGAGCACATGCTGTCAGCAGCCAGGGCGGTCAGGCCCAACCTGTATGTGATCGCGGAGCTCTTTACAGGCAGCGAGCTCATTGATAATGTGTTTGTTAACCGCCTGGGGATAACCAGTCTTGTCAGAGAGGCAATGAGTGCAGGGGACAGTCATGAGGAGGGCAGGCTGGTGTACAGGTACGGAGGGGAGCCCGTCGGAGCCTTTGTCCAGCCCAGCCTCCGGCCCTTGGTGCCCAGCATCGCCCACGCCATGTTCCTGGATGTCACCCACGACAACGAGTGCCCCATCCAGCTCCGCTCTGCGTACGACTCGCTCCCCAGCTCTGCCATCGTCTCAATGGCCTGCTGTTGCTCTGGCAGCACCAGGGGATACGATGAGATGGTGcctcaccagaTCTCAGTGGTGAAGGAGGAGCGTTTCTACCCCAAGTGGAACCCCGACGCCAAGGCCTCGTCCCCCGGCGAGGTCAACCTGAAGACGGGTATTATCGCCGGCAAGCTGGCCCTCAACAAAATGCACCAGGATCTGGCCTCCAAGGGCTTTAACCAGGTGTACGTGGACCAGGTGGACGAGGACGTTGTGGCGGTGACGCGTCACTGTCCCAGCACACACCAGTCTGTGGTCGCCGTGTGTCGCACTGCCTTCCACAACCCCAAACACCACCAGTATAGGAAGGAGGTTCCCCCCATGTTCATCCCTGgTAAAATTGACGAGGTGGTTCTCGAGGCGCGTGTCATCGACAGGCAAGCCGGCACCTACAAGAAATGTGAGAAGTACATTAACGGCATGCCGGAGTACACTGTGGAGATTAAGGAGCACATCCAGCTGAAGGACAGTGGCGTTGTGAAACATGCAGGGGTGACATCCAAGGGCAGcagtgagtttgtccaggagatCGTCTTCGAGCGCCTCACCCCCGGCAGCGTCATCGCCTTCAGGGTGAGTCTGGACCCCAGGGCCCAAGAGCTGGTGGGAGTCATCAGACATCACCTGATCCAGTTCAGCCCCAAGTACAAGCTTGGCAGTCTGCCCGACCAGCACACACCAACCATACTGGAGACACCCCTGGCACAGATCATGTCTAAGCTGACCCTGGCCGACATGAACATGCTGCTGTTCCGCTGTGACTCTGAGGagcaggaggaaggaggaggctgCTACAACATCCCCTCCTGGACTAGCTTCAAGTACGGTGGCCTGCAAGCTTTGATGTCAGTGATGGCAGACATTCGTCCCAAGAACGACCTGGGCCACCCGGTGTGTGACAACCTGAGACAGGGTGACTGGATGATTGACTACGTCAGCAACAGGCTGGTATCCCGTGGTGGCGCTCTAGGAGAGGTGGGGAAGTGGCTGGAAGGGATGTTCCACTATCTGAAGCACATCCCTCGCTACCTCATCCCCTGCTACTTTGACGCCATCCTCGTGGGAGCCTACACCACAGCTCTGGACATCACCTTCAACAAGATGTCCTGTTTTGTCCAGAACGGCTCCACCTTCGTCAAACTGCTGGCTCTGGGCTCGGTCCAGATGTGTGGTGTTGGCAGTTTCCCGGCTCTGCCCCCCTTGTCCCTGGCGCTACCCGACGTCCCCTACCGCCTCGACAAGGACACCGGCAAGAAGGAGCAATGCTGCGTCTCCCTGGCTGCAGGTCTGCCTCACTTCTCCTCTGGAATCTTCCGCTGCTGGGGCCGAGACACCTTTATCGCTCTGCGTGGACTCATGCTGGTCACTGGTCGTCACCTGGAGGCTAGAAACATCATCCTGGCGTTTGCAGGCACCCTGAGACACGGTCTTATCCCCAACCTGTTGGGCGAGGGCATCAGTGCACGCTATAACTGCCGTGACGCAGTGTGGTGGTGGCTGCAGTGCATCCAAGACTACTGTACCCTGGTGCCCGAGGGCACTGCCGTCCTCCACTGCCCTGTGGTCAGGATGTATCCCCATGACGACTCCGAGCCCCACGCCCCTGGCACTCCGTTCTCGTTCACACAGCCCCTTTGTGATGTCATCCATGAGGCCATGACTCGTCACATGCAGGGCATCGACTTCAGAGAGCGCAACGCCGGGCCAAATATCGACATGCACATGAAGGACGAGGGCTTCAATGTTGTGGCCAAAGTGAATCGTTATACTGGTTTTGTGTACGGCGGCAACCGTTTCAACTGCGGAACGTGGATGGACAAAATGGGAGAGAGTGACAAAGCTCGCAACAAGGGCATGCCCGCCACACCCAGAGATGGGTCAGCGGTGGAGATGGTGGGTCTCTGTAAGTCTGCGGTGCGCTGGCTGGTGGAGCTCCATAAGAAGGGCCTTTTCCCCCACAGCTCCATGAAAATACACCGGGACGGTAAGGAGTTGAAGGTGTCCTATGAGGATTGGAACCATAAGATCCAAGTCAACTTTGAGAAGAACTTCTATGTGTCCCATGACGAGAAGGACCCCGACGAGAAGCACCCCGACCTGGTCCACAAGAGAGGCATTTACAAGGACAGCCACGGAGCCTCCAGCCCCTGGTGTGACTACCAGCTCAGGCCCAACTTTTGCATCGCCATGGTGGTGGCTCCTGAGTTGTTCACGGTGGAGAGAGCCTGGAAGGCCCTGGAGGTCGCTGAGAAGAAGCTGCTAGGACCTCTGGGAATGAAGACCTTGGATCCAGATGATATGGTGTACTGTGGTGTCTATGACAACGCCCTGGATAACGACAACTACAACGTGGCCAGAGGCTTCAACTACCACCAAGGACCGgagtGGCTGTGGCCAATTGGGTACTTCCTTCGAGCAAAGCTCTATTTTGCCAAGAAGCTTGGGAAGGAGACCTATGACCAGACAGTGTACCTGGTGAAGAGCATACTCTCTCAGCATTATGTCCACCTGGAGAGGTCTAGTTGGAAGGGTTTGCCAGAGCTGACCAATGAAAACGGACAGAATTGCCCCTTCAGCTGCGAATCCCAGGCCTGGTCCATCTCCACGGTGCTGGAAGTCCTCCACGACATGTGACAACACCTCAATTCCTGTGGAAGGAGACCCGCCCTATGATCTCACTTCCTGTGGGTGGAGACTCGTCCCCTCTTGTAGTCCGGCATTGTTTAATTTCACCTTCGTAGTGTGGTCTTTGTTGTCTTGTTTTGGACCTCATGTACACCCCATGGACTAACCATACTGGGATCTCAAGTATACAGCAGGCTAATGCCTAGTGAACATGTGAACACCAGCACTTGCAGTTTGTTGTGGAGGGCGTTGGGAAATTGTAGTTCACAGCCTCATTTAACACCTGACTTAGTGTTGTCAAGGTATCTGTTACAGTAGATATGAGCTAATGTTATCGCACTTAAAGATGAGGTGATGTATTCTAAGGTTGGAAGACCGACTGTTTTTAAAACCAGATTACCTCCTAGGTAGATAAACTTTCATCTTGTCGCCTTAGCTGCTAACCTGTCTCTTTTAAAGACTGTATCAAAGTGTACTGTACTATGAAATTTGTCAATTGGTGATCCATTGTCGTGTGCTACCATGCCTTTTACTGGAGTTTAGATCCCTAAATAGAAACCTCTGTGGAAACGTGTCACTGTGACTGAAACCTTGTAGAGTTGCTCTTCTATCTATGACCCTCTAAATGTGATGCATCTCTCCTTGTGAATCTGATGCCTCATTTTATTGGTCAACATGCATCTAGCTTatagtgtgtttagtgtgtctAGTCTACATAGTGTTGTCATGGTATATAAACAGTCTGCAACCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822863 lncRNA downstream 6226 55724017 ~ 55724208 (-) True G724373
TU822862 lncRNA downstream 6948 55722977 ~ 55723486 (-) True G724372
TU822861 lncRNA downstream 8016 55722103 ~ 55722418 (-) True G724371
TU822860 lncRNA downstream 9110 55721084 ~ 55721324 (-) True G724370
TU822856 lncRNA downstream 11721 55717864 ~ 55718713 (-) True G724366
TU822907 lncRNA upstream 270 55764323 ~ 55764554 (-) True G724398
TU822916 lncRNA upstream 28985 55793038 ~ 55793818 (-) True G724406
TU822939 lncRNA upstream 61982 55826035 ~ 55826459 (-) True G724416
TU823110 lncRNA upstream 91426 55855479 ~ 55857407 (-) True G724584
TU823123 lncRNA upstream 104146 55868199 ~ 55868491 (-) True G724594
XM_036985725.1 mRNA downstream 41450 55683625 ~ 55688984 (-) True LOC110530171
XM_036985726.1 mRNA downstream 41451 55683625 ~ 55688983 (-) False LOC110530171
XM_036985723.1 mRNA downstream 41452 55683625 ~ 55688982 (-) False LOC110530171
XM_036985724.1 mRNA downstream 41452 55683625 ~ 55688982 (-) False LOC110530171
XM_021613030.2 mRNA downstream 115500 55567843 ~ 55614934 (-) True LOC110530170
XM_021613040.2 mRNA upstream 5373 55769426 ~ 55774173 (-) False LOC110530175
XM_021613039.2 mRNA upstream 6295 55770348 ~ 55774173 (-) True LOC110530175
XM_021613041.2 mRNA upstream 35855 55799908 ~ 55814343 (-) False LOC110530176
XM_036985739.1 mRNA upstream 35855 55799908 ~ 55814928 (-) False LOC110530176
XM_021613042.2 mRNA upstream 37375 55801428 ~ 55814348 (-) True LOC110530176
TU822777 other downstream 84420 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 333549 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 352658 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1448456 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1478888 54251114 ~ 54251546 (-) True G722854
TU822909 other upstream 21464 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 356150 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 455463 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 610600 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 619076 56383129 ~ 56386516 (-) True LOC110530186

Expression Profile