RNA id: XM_021613039.2


Basic Information

Item Value
RNA id XM_021613039.2
length 2080
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110530175
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55769426 ~ 55774173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAGAAGACTTGTACATAGCATTTGTTTATTGAGTTAATGCCAAATAATAGAAGGGGACAtttaacatgtgtgtgtgtgtgtttcaaagtAGATTAGAGAAATATTGACAATTATAGAATGGAACATGTCTGTGTGGATTTGCAGGAAACAATTTGGTCTATTACTCCGACATTATAGACTAGACTGTGCTCTGAGAAGGAAAGTAAGTCAGGCACTGGGAAACCACAGAGGTGTGCTGTTTTGAGCTTGACTTGTCAGTTGCAGACATGTAGATAGAGGAACCCGGTTAGACAGAAGGAGCTATCGAAGTTGAACATTGTGACAGAGTTAGATGAGAGGAGGGGCATTTATAAAGTGTATGTCATAAACAAATGTGTCAGGTATAAAAGGCTATGTGCATTGTATGATACTCAGAGCTCTCGTGAATAAAGAATCTGACTCTTGAAAGCTTGGTCTCCGTCTGCTTCATTTAAACCAGAACCTTACAAACTCTGGGTTGCAGACTGAGTAGATTAATTAAAGTTCCGTTTaagaacattgagaacataattctcttaACACATAGTCAGCTATCGACTGGACAGCCAGTTATCTAGACAGGCCTACATTTGAGCTGTTGAAGTGAGATAGGTACAATGGAGGACAGAAGCCTTCCTCGTGTTGTGGTCATTACACTGTCTGTGCTGATCTACATTTCTGCTTTGGCAATAAATGCCATGGCAGGAGCTGGAAAGGGACCATTCCATTGGAGTACAGGGAACATCTCCAGGAAGTATGAGACTGACATAACTCCGTCCGGATGGACCTTCTCCATCTGGGGGCTTATCTACACCTGGCTGGCCCTCATGGTCATGTATATCATCTCCTTGATCTACAGAGGGAGCTGGACCCTCTCTGTGCTACTGTGCGGTTTCTACCTGTCCTGGATAGTTAACATGGCCCTCAACATGACCTGGCTGCTCCTATGGGATCAAGAGCAGGTGACTGCTGCATTGATTGTAATGGCGACCATTGCTGTCACCTACTACTCCGTGGGCTTCTTCTCCTGCTATGGGCTGAGTGTTTACGGAGCCTGGCTCAGCCAGAACCACCCCTGGGACCTCTGGTGCATTCGTTTGCTGgTGCAAAATAGCATTGCGCTGTACAGCACGTGGACAACTATCGCCACTTTGATCAACTTCACTCTGGTGTTGGACCTCTCTGGAGTGGCAAGGAGCACTGCAGCCACCGTGTCTCTCTGCATCCTACTGGTGGAGGTGATCGGATGATTTGGTATTGAGAACTTCCTGCTGGATCAGCATGTGAGGTACATCCTGACTATTTACCCTGTGGTGATCATTGCTCTGGTTGGAAACGTGACCAAGCACTACGGCCCTGCAGCACCAAGCGCTAACGCTATCTTCATGGTTGTGCTCTTGGTGATTTCCTGTGTGCTCCTCCTGGTGGTGCGAGTCTCCCTGGTGATCAGGAGAACCAGGAACCAGACCCTTCACCCGGAGGCTCTGACCTCACCCAGCAGCCTGTCCAAGAAGCAGAGGAAGATTCTCATGTAGACAACTGGTAcacacttacttacttacttactgactttattgtccccatggggacattttgttgtAGTGTCATATACACGTTTAAAGTGgcatttaaatacaaaacaaaattgacaatacaactttcataacagttacataccaataaaacattaaaaaaatataaataataaagacaagcctgctggccttactgagtcgataggaacattagcccgagctatttaggagggatatcacacctggcacaaatgattgtctggttctgtttttcctgctgaggggtgccctatacctACAGGGGGTGGCTTGTgtctaaaatgattttgtgagccttgcggaggccactgaccttaaagatctcatccatgcctgtctgtttgactccaagtaccttgcttgctgtggtgataatccttctcagcatatttctctggctgacagtggcattgccaaaccaacaaacaatacaaaaagttcAAATACTCTCAATGAAAGATTGGTaaaacagagtcagtatagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822907 lncRNA downstream 5794 55764323 ~ 55764554 (-) True G724398
TU822863 lncRNA downstream 46140 55724017 ~ 55724208 (-) True G724373
TU822862 lncRNA downstream 46862 55722977 ~ 55723486 (-) True G724372
TU822861 lncRNA downstream 47930 55722103 ~ 55722418 (-) True G724371
TU822860 lncRNA downstream 49024 55721084 ~ 55721324 (-) True G724370
TU822916 lncRNA upstream 18865 55793038 ~ 55793818 (-) True G724406
TU822939 lncRNA upstream 51862 55826035 ~ 55826459 (-) True G724416
TU823110 lncRNA upstream 81306 55855479 ~ 55857407 (-) True G724584
TU823123 lncRNA upstream 94026 55868199 ~ 55868491 (-) True G724594
TU823124 lncRNA upstream 94380 55868553 ~ 55868787 (-) True G724595
XM_021613036.2 mRNA downstream 6295 55730434 ~ 55764053 (-) False LOC110530174
XM_021613037.2 mRNA downstream 6295 55730434 ~ 55764053 (-) True LOC110530174
XM_036985738.1 mRNA downstream 6427 55730434 ~ 55763921 (-) False LOC110530174
XM_036985725.1 mRNA downstream 81364 55683625 ~ 55688984 (-) True LOC110530171
XM_036985726.1 mRNA downstream 81365 55683625 ~ 55688983 (-) False LOC110530171
XM_021613041.2 mRNA upstream 25735 55799908 ~ 55814343 (-) False LOC110530176
XM_036985739.1 mRNA upstream 25735 55799908 ~ 55814928 (-) False LOC110530176
XM_021613042.2 mRNA upstream 27255 55801428 ~ 55814348 (-) True LOC110530176
XM_021613046.2 mRNA upstream 41211 55815384 ~ 55839341 (-) True LOC110530178
XM_021613047.2 mRNA upstream 98780 55872953 ~ 55896342 (-) False LOC110530179
TU822777 other downstream 124334 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 373463 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 392572 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1488370 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1518802 54251114 ~ 54251546 (-) True G722854
TU822909 other upstream 11344 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 346030 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 445343 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 600480 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 608956 56383129 ~ 56386516 (-) True LOC110530186

Expression Profile