RNA id: XM_036985739.1


Basic Information

Item Value
RNA id XM_036985739.1
length 3933
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110530176
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55799908 ~ 55814928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtgtgtgtaacAACTGTCACCAAAACTGCTGTtttgtgattggttgattcccACGTACCCGATTTGTGTCGCTGCCTGCCGCTGTGGcgtattgtgttgtgtgtttgtgtgtcagacaTATACAGACCAAGCACACTCCACTTCATCACTCCACCACTGGACCGGCCCAAACCCGGATCACCTTGGAAACTCCCGGAGAGAGAGCCACAGCTGGAGTGAAGACGATAAAGGGGAATGAAGTGATTGAGGGCTGTAGTGCTATCGACACTCcacaagagaaagaaaaagaacaAGAATCCCACTCTGGGGCCATAGCCATGGAGACCAGCCAGCTTTCAGAGATGGCGAACCTAACAGACTATAAAATGGATTCTGGGGAAACAGAGGACCAGAGACGCCTGCTTAGCGAAAGCGAGGAAGAATGTGATCGAGAACCTTTCGCAGAATACAGAGGAACAAAAGAGAACTTAAAAACATCAGTGGATGAACCGGACGAAGATGATGAAAGTGGTGAggtgaacagagaggaggagactcACAACTTTGAGACTGGACGAAATGATTTCAGTCTAACACAGTTACTCAACTCCTCAAGTATATTTGGTAGTGAACCCGTTTGCAAGGTGGAAGACCTGCTTGCACAAGGTCACCTGGGCAACTCTTCTCCATCAGAAGTGACGATGACACAAGAGTCCATCTTGGAGCAGCGCATCCGAGAGGAGGTCTCCTCAGATGTCTCAACAGGGTCCTGTCACGACCCTGACCGAGACGACCTGAGTGACTGTCTCCAGGTAGAAATGGCCATCGTGTCATCAGACAGCGAGGCCGACGACCAGTGGAGGTCCACTTTTGCTTCTACAGTCAACAAGGAGGAAGGTTGTGATGGAAATGCTCAAGAGGCCCTCGAGAAGGACAGAGCCGCAGGGGAGGCAGAGAATGGGACCAAGGGTGAAACTGGAGATAGTCCTCGCGTTCTTGAACAACCCGATTGCCCGACAGAATGCGAGATCCAAGACATGCCCTCTGGCAAGTTCCAGGGCTTATCCAAAATTCcagaggatgaagaagaggtcAGCCAAGGCAGGACTCGCAAAGTGAGTCGTTCTACATCTGCAAGCTCTTCTGCAAGCTCTGACCCCGACAAGAAGGTTCCTAAAGATTACTGTGTGATACAAGAAATGAAGAGCAAGAACATTAGTACAGAGCATGTGGACTTCCAGGGGGCTCGGAAGCAGTGGCGTCAAATGGAGGAGCAGACCCAAGGAGAGGTCCAGGTCCACCAGCCCACTGTCAGACAGCAGGGGATGTGCCAGGGAGGTCACAGTGCCATGTACACACCCGTCAGGAACATTGACCGACCCAGGAGGGACCCCGAAATTGACAGCCTTGCCCTTGGTGACTTTCAACACACTCAGTTCAGCCCATGTTCAGAAGACTCAGGTATGGATGACTTCAGCTACAGGTCCCTTTACGAGGACTCAGACAACCCTGTCGAAAGGGAGATACGACAGACCATAGAGCGTGAGGAGAACTTCAGGCGTGAGAGAGAGATTGCCAAACAGGGTCAAGCTGGAGAATCATCTGCACATTCGAAAACCCGACCAACTACTCTCTACCCCGGCAAGTACGGCAAAGGCCTTTGCCATGAGGTGGAAGAGAAACGGAAGATGTTTGAGTCTAGTGATCCCGGATGCAGGCCTTTGAGGTCTCCCAACGCAAAGAACCCAACCGTCTCCATATCCACCTCCCCATCGCCCACACCAAGGGGTGCAACCTACCATGAGATGACCGCCCAAAATGTTATCATCCTGGAGCCGGACTCCTACCCCACCAGCCCGAGGCACCGCACCCGGGGATCCTTGCTATCTCCGGGGCCCAGCAGGTACAGTGAGTGGCCCTTGGAGACGTCAGCCAATGTCATCATTTTGGAGACGTCCAATCTGATCATCCGGAGTGCCTCTGAGTTCTGCCTGAGCTCGGCCTCCTGCCAGGAGACCCAGGAGAGCACATTTGTCAACAACCCCTTCTTCAAGCTGCGCTCGCGGAGCTCCATGTCCCTGGTGGACCAGGAGATTAAGATGGTgaagcagagggaggaggagtggaggaggcaGAAGAGCCAGATGCAGACCAGGGAGAAGTACGACACCGTCCTGGTGTCCCCAAACCTCCTTGATAACCTGAGCTTTGATAAAGCAGAAGTGCCACTGAAATGTGTGTCTTCCCCTTCATCACCATCAAGGACTCGAAAGCTGGACCGCTCCGCCCTGTCATGTGACCATAGGTTCCCAGAATCACTCTCCCCAGGACCGAGGAAAAAGAATGCCATGGCTCAGAGATGGGAGGCAGGACTATTTGTCAACCATGAAAAAGAGTAACATCAAACCAGAATAATACCGCACCATACTACAGATGCCAACTTCCTGAACTTTAGATGTTTTCCAGTTCTGCTATTGATACAGCTTGAATATTGACCGGTACTGTAGCTTTAAAGTTATTGTGAAACAAATGTAAATTAAATTGTAAGAGATGAGAATTTGAAGATAGATGGACTGCCAGATGCTTTTTGAATGTGACAAGTACATGATTATATTGTCTGGTTaagatttttacatttttaagtaCTGTCTTGGTTATACAAAATATATTGCATTTTTGTATTGTATTCTAAACACTTTAAATTAAGAGGCTATGAGAAATGTGGTAGACTTACACCAGCGACcgatttgtttttttttgtcaaatgtGTATTATGAAATGTATATATTACCTGCATAATTACCTTCATGCAAAGTGTTTAATATGATAGCCACTTATAGTATATTCAAAGCTTGACCTGACATTGCCATTTTGAGATGCCTTTTCAAttatgccttttttttttttttaaaccttcaaatgtgatattttttggGTTGCAGTTGGTTTAGTATTACTTGCTAGACTAGCGCAAAACTCCAAGCGGAATACTTTAACGTTTAAACGACATTCATAATTTTAAGTGTTGTTGTTTCATGGAGAACGTGTTTGTTAATTCTCAATTGAAAATGCTACGCCAAAATAAAGTTGGATTGACATTAAGGACAATAATTGGCTGTGTCCTTCTGTTACCTAGAAATGCATGTGCCTGTCAGTGTGTATTGATTGGGAAGCTAGCTGTAAATCCAATAAAATGTACAGCCACAGGAAGGGAGTTACATTTGGAAAGTTATTTATTTAACAATATTACACTACAGGATAATTTCTGTTTTGGAAACATAAATGAACAAAGTGAATGTAATTATTCATTAACATTGTGGGAATAAATTGTGCATTCTCCCTTACATATATTCAGCAACACTTCGCAgataaaatgtaatgtaataaacATGAACTCATGGGACAAGGCTGTATCGAGTATTGAAATGCATTACACACTCAGTGGACAgtttaggtacacccatctagtaccgagTCAGACCCCCCTTTGCATCCAGAACGCCTgaattctacaaggtgtcaaacgttccacagggatgttggtccatgctgacatGAAGGCATCAGAGTTAATGTAGATTGGATGGCGGTACATTCATGCTGCGAACAGCCCGTgccatctcatcccaaagatgCTCTATTGAGTTTGTTCCTGACCAATGTTcagataccaattgagcaacaacTGCCACAgcgtatcaagggacctaacacaTGGCAGGAAAACATTCCCTACACCAGCCTGTACCGATGACACCTaggcaggatgggtccatggactcTGCTACTTATGCCAAATCCTGTCTGCCATTAGCATGacacaacaggaaccgggattcttCAGACCAGGCAATATTTTTTCCACTcgtcaattgtccagtgttggtgatcacgtGCCCAATGAAGAGTTGTTTATAGCTGAAAGGAGTGGtggtctgctgcaatagcccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822916 lncRNA downstream 6090 55793038 ~ 55793818 (-) True G724406
TU822907 lncRNA downstream 35354 55764323 ~ 55764554 (-) True G724398
TU822863 lncRNA downstream 75700 55724017 ~ 55724208 (-) True G724373
TU822862 lncRNA downstream 76422 55722977 ~ 55723486 (-) True G724372
TU822861 lncRNA downstream 77490 55722103 ~ 55722418 (-) True G724371
TU822939 lncRNA upstream 11107 55826035 ~ 55826459 (-) True G724416
TU823110 lncRNA upstream 40551 55855479 ~ 55857407 (-) True G724584
TU823123 lncRNA upstream 53271 55868199 ~ 55868491 (-) True G724594
TU823124 lncRNA upstream 53625 55868553 ~ 55868787 (-) True G724595
TU823116 lncRNA upstream 58093 55873021 ~ 55878723 (-) True LOC110530179
XM_021613040.2 mRNA downstream 25735 55769426 ~ 55774173 (-) False LOC110530175
XM_021613039.2 mRNA downstream 25735 55770348 ~ 55774173 (-) True LOC110530175
XM_021613036.2 mRNA downstream 35855 55730434 ~ 55764053 (-) False LOC110530174
XM_021613037.2 mRNA downstream 35855 55730434 ~ 55764053 (-) True LOC110530174
XM_036985738.1 mRNA downstream 35987 55730434 ~ 55763921 (-) False LOC110530174
XM_021613046.2 mRNA upstream 456 55815384 ~ 55839341 (-) True LOC110530178
XM_021613047.2 mRNA upstream 58025 55872953 ~ 55896342 (-) False LOC110530179
XM_021613049.2 mRNA upstream 460163 56275091 ~ 56294377 (-) True LOC110530183
XM_021613052.2 mRNA upstream 559660 56374588 ~ 56386152 (-) False LOC110530186
XM_021613051.2 mRNA upstream 559660 56374588 ~ 56386539 (-) False LOC110530186
TU822909 other downstream 8423 55785517 ~ 55791485 (-) True G724400
TU822777 other downstream 153894 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 403023 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 422132 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1517930 54281685 ~ 54281978 (-) True G722864
TU823541 other upstream 305275 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 404588 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 559725 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 568201 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 773415 56588343 ~ 56589271 (-) True G725280

Expression Profile