RNA id: XM_021613042.2


Basic Information

Item Value
RNA id XM_021613042.2
length 3714
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110530176
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55799908 ~ 55814928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGGTGAAGTGGATAGAAACAAATCTCTGTTCCAGTGAGCCAGCTGAGTTTAGGAGAAAACACAAGAGGGTGGATTCAACTGTAGAAACACTCACAGCAGCACTGCACTTTCCTGCACACACTGGAGAGGTTGTCAAGTGTACCACTGGTTTAAGACTGAGGGGAGTTTATTTTTGAATGATTATTTATTCGTTTTATAGGTTTTTTATTTCTGGGTGGAGGGCTGTGCCAAGTTGTTGTGAATTGAGGAAGAGCTTTTGAAAGCTACTCTGACATACAGTTGCAGGTATTTTGCACAGATGGAATGtcacctggaacccaaaaggttcCAGTTTACGGGCATTCACATGACAAAAGATAGGGATAGATAAGGGGTATATCATTTTAACCAATTTGGGCAAATAGAACTAACTGTGTGTTGTATAGATTTTCTGTATTTGTATGTATGTGATAGATACAGTGGTTTTGGGGGGTTCTCTTCTGTATGTATGTAGATATGGTGGTTCTGGGGGTTATCTTCTGATTTTAATTAACTAACACCTTTAATGCCTCGTTTATGACAAAGTGTCCAAAGTGAACAATTGATCCCAAATATTGGGCACAGAAGAGAATCCACCTTGCTTAAAAATCCATAATTTATCCAGATTTGAATGGCTTTTGAATGGCAGTGAGTCAACTGTGTCTTAAATACATGTCATCACCCAAGGCTTCACTGGTGCCCCTCAGCTCTGGTTTATCTTTGAAACCAGGATTTCTCCTGGAAAGGTTTACAGATGTTCTAATTCTCCACCTGTAGCTACATCATATTAATACCACAACCCCGACAGCCAGAGACATGGTCATAGGAACGAAATGTATGGACAAAACCAGACAGAGATGGTTCACTCACATGTCAGAGAAAGAGTGTATATAATGTATAACATGTTGTCCGCTAAAGGTAGAAGACGAAGGACCACAATAAATAATCAATCAGTTAACTAATGATTCGGAGAGCAACAGTGACCTTGGTCATGAAAATCGACTAGTGTTTCAAAAAGTGCGTGGGCAAAATCAAACGCTCAATAGCTGGTCCCTGAAAGAGATGGAGCCTGAGGGCGATAGCTAGACGCTGCAGAAGTCGATGCATGCGCACCCAACGTATCTATGTGAATGGGGACTAGGGAGGATGCTATGAGAGAAGAGCCGGGGTCGCGTGTGATTCAATGCATTTCAGTGGCATTTATGCCAATACTTATCGCGTCTGCTCTAGTTAACTTCAGACAAGTTTGCCATGCAGATCGATGATTCCAACCGagacccaccacacacacccacagaaacGCAAATATGTTCACTCTCCAAATCAAACCTGAATTACTCGCGACGGGTGGCCGCATGGTTGAGTTCTCCACTTGTCAGTGTAGTTCAAATAATATGTAGGCGCCTGGGTAAATTGGAGATGATATCCTTCTGGTTGCTCTGTTGGAGACTGCTGAGAGCCACAGCTGGAGTGAAGACGATAAAGGGGAATGAAGTGATTGAGGGCTGTAGTGCTATCGACACTCcacaagagaaagaaaaagaacaAGAATCCCACTCTGGGGCCATAGCCATGGAGACCAGCCAGCTTTCAGAGATGGCGAACCTAACAGACTATAAAATGGATTCTGGGGAAACAGAGGACCAGAGACGCCTGCTTAGCGAAAGCGAGGAAGAATGTGATCGAGAACCTTTCGCAGAATACAGAGGAACAAAAGAGAACTTAAAAACATCAGTGGATGAACCGGACGAAGATGATGAAAGTGGTGAggtgaacagagaggaggagactcACAACTTTGAGACTGGACGAAATGATTTCAGTCTAACACAGTTACTCAACTCCTCAAGTATATTTGGTAGTGAACCCGTTTGCAAGGTGGAAGACCTGCTTGCACAAGGTCACCTGGGCAACTCTTCTCCATCAGAAGTGACGATGACACAAGAGTCCATCTTGGAGCAGCGCATCCGAGAGGAGGTCTCCTCAGATGTCTCAACAGGGTCCTGTCACGACCCTGACCGAGACGACCTGAGTGACTGTCTCCAGGTAGAAATGGCCATCGTGTCATCAGACAGCGAGGCCGACGACCAGTGGAGGTCCACTTTTGCTTCTACAGTCAACAAGGAGGAAGGTTGTGATGGAAATGCTCAAGAGGCCCTCGAGAAGGACAGAGCCGCAGGGGAGGCAGAGAATGGGACCAAGGGTGAAACTGGAGATAGTCCTCGCGTTCTTGAACAACCCGATTGCCCGACAGAATGCGAGATCCAAGACATGCCCTCTGGCAAGTTCCAGGGCTTATCCAAAATTCcagaggatgaagaagaggtcAGCCAAGGCAGGACTCGCAAAGTGAGTCGTTCTACATCTGCAAGCTCTTCTGCAAGCTCTGACCCCGACAAGAAGGTTCCTAAAGATTACTGTGTGATACAAGAAATGAAGAGCAAGAACATTAGTACAGAGCATGTGGACTTCCAGGGGGCTCGGAAGCAGTGGCGTCAAATGGAGGAGCAGACCCAAGGAGAGGTCCAGGTCCACCAGCCCACTGTCAGACAGCAGGGGATGTGCCAGGGAGGTCACAGTGCCATGTACACACCCGTCAGGAACATTGACCGACCCAGGAGGGACCCCGAAATTGACAGCCTTGCCCTTGGTGACTTTCAACACACTCAGTTCAGCCCATGTTCAGAAGACTCAGGTATGGATGACTTCAGCTACAGGTCCCTTTACGAGGACTCAGACAACCCTGTCGAAAGGGAGATACGACAGACCATAGAGCGTGAGGAGAACTTCAGGCGTGAGAGAGAGATTGCCAAACAGGGTCAAGCTGGAGAATCATCTGCACATTCGAAAACCCGACCAACTACTCTCTACCCCGGCAAGTACGGCAAAGGCCTTTGCCATGAGGTGGAAGAGAAACGGAAGATGTTTGAGTCTAGTGATCCCGGATGCAGGCCTTTGAGGTCTCCCAACGCAAAGAACCCAACCGTCTCCATATCCACCTCCCCATCGCCCACACCAAGGGGTGCAACCTACCATGAGATGACCGCCCAAAATGTTATCATCCTGGAGCCGGACTCCTACCCCACCAGCCCGAGGCACCGCACCCGGGGATCCTTGCTATCTCCGGGGCCCAGCAGGTACAGTGAGTGGCCCTTGGAGACGTCAGCCAATGTCATCATTTTGGAGACGTCCAATCTGATCATCCGGAGTGCCTCTGAGTTCTGCCTGAGCTCGGCCTCCTGCCAGGAGACCCAGGAGAGCACATTTGTCAACAACCCCTTCTTCAAGCTGCGCTCGCGGAGCTCCATGTCCCTGGTGGACCAGGAGATTAAGATGGTgaagcagagggaggaggagtggaggaggcaGAAGAGCCAGATGCAGACCAGGGAGAAGTACGACACCGTCCTGGTGTCCCCAAACCTCCTTGATAACCTGAGCTTTGATAAAGCAGAAGTGCCACTGAAATGTGTGTCTTCCCCTTCATCACCATCAAGGACTCGAAAGCTGGACCGCTCCGCCCTGTCATGTGACCATAGGTTTTACAGGTGAAACTCTTTCCTCCAGTTCCCAGAATCACTCTCCCCAGGACCGAGGAAAAAGAATGCCATGGCTCAGAGATGGGAGGCAGGACTATTTGTCAACCATGAAAAAGAGTAACATCAAACCAGAATAATACCGCACCATACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822916 lncRNA downstream 7610 55793038 ~ 55793818 (-) True G724406
TU822907 lncRNA downstream 36874 55764323 ~ 55764554 (-) True G724398
TU822863 lncRNA downstream 77220 55724017 ~ 55724208 (-) True G724373
TU822862 lncRNA downstream 77942 55722977 ~ 55723486 (-) True G724372
TU822861 lncRNA downstream 79010 55722103 ~ 55722418 (-) True G724371
TU822939 lncRNA upstream 11687 55826035 ~ 55826459 (-) True G724416
TU823110 lncRNA upstream 41131 55855479 ~ 55857407 (-) True G724584
TU823123 lncRNA upstream 53851 55868199 ~ 55868491 (-) True G724594
TU823124 lncRNA upstream 54205 55868553 ~ 55868787 (-) True G724595
TU823116 lncRNA upstream 58673 55873021 ~ 55878723 (-) True LOC110530179
XM_021613040.2 mRNA downstream 27255 55769426 ~ 55774173 (-) False LOC110530175
XM_021613039.2 mRNA downstream 27255 55770348 ~ 55774173 (-) True LOC110530175
XM_021613036.2 mRNA downstream 37375 55730434 ~ 55764053 (-) False LOC110530174
XM_021613037.2 mRNA downstream 37375 55730434 ~ 55764053 (-) True LOC110530174
XM_036985738.1 mRNA downstream 37507 55730434 ~ 55763921 (-) False LOC110530174
XM_021613046.2 mRNA upstream 1036 55815384 ~ 55839341 (-) True LOC110530178
XM_021613047.2 mRNA upstream 58605 55872953 ~ 55896342 (-) False LOC110530179
XM_021613049.2 mRNA upstream 460743 56275091 ~ 56294377 (-) True LOC110530183
XM_021613052.2 mRNA upstream 560240 56374588 ~ 56386152 (-) False LOC110530186
XM_021613051.2 mRNA upstream 560240 56374588 ~ 56386539 (-) False LOC110530186
TU822909 other downstream 9943 55785517 ~ 55791485 (-) True G724400
TU822777 other downstream 155414 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 404543 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 423652 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1519450 54281685 ~ 54281978 (-) True G722864
TU823541 other upstream 305855 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 405168 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 560305 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 568781 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 773995 56588343 ~ 56589271 (-) True G725280

Expression Profile