RNA id: XM_021613049.2


Basic Information

Item Value
RNA id XM_021613049.2
length 3125
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110530183
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56275091 ~ 56294377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATGACAGCATTTGCGACCATTTTGCTGACGTGCTTGTGTGTCTGAGTGGAGCTGAGGTTTAAAGAATAAATATATACACGAAAATAAACCTAATTCGGCAATGGACGGCATTGCCACTGATGTTGCAGTTGGCGTGAAGAGAGGCTCAGATGAATTAAATCTCTACAGCACCAGCCCTAACTCTGTGACTGCTAACGGCAATGACAGCAGTAAAAAACTGAGAGTAGAGGACAGGATGGAGAGTCCCCCATCCCGGGTGCTCCACATCCGGAAGCTGCCCAGTGAGGTGTCTGAGACGGAGGTCATCGCCCTGGGCCTACCGTTCGGCAAGGTCACCAATATCCTCATGCTGAAGGGCAAAAATCAGGCGTTCCTCGAGCTGGGTACAGAGGAGGCGGCCGTTACAATGGTGAACTACTATACGGCAGTGACGCCTCAGGTCCGCAACGTCCCAGTGTTCATCCAGTTCTCTAACCACAAGGAGCTCAAGACAGACAGTGCTCTCAACCAGCGTGCACAGGCTGTCCTCCAGGCAGTGTCGGCGGTTCAGGAGGGTGGCTCTCCCAACTCTGACACCAGTGCGCTGGATAGTGTTCTTGCGCAGGCCCCGAGCCCCGTGCTCAGGATAATCATTGACAACATGTTCTACCCCGTCACTCTGGACGTCCTCcagcagatcttctccaagtttGGAACAGTCATGAAGATCATCACGTTCACCAAGAACAATCAGTTCCAGGCCCTGCTTCAGTTCAGCGAACCAGTCAACGCCCAGCAAGCCAGGCTGTCCCTGGACGGCCAGAACATCTACAACTCATGCTGCACACTGCGGATCGACTTCTCCAAACTGGTCAACCTCAATGTCAAGTACAACAACGACAAGAGCCGCGACTACACCCGGCCCGAGCTGCCCGCTGGCGATGGCCAGCCCTCCCTAGACCCTGCCATGGCTGCCGCCCTCAACAAGGACTCCTCCCTGCTTGGTACCCCCTCAGGAATGGTAGCTCCCTACTCTAGCGGTGGAGGGTTTCAGTCTTCTCTTTCCTACTCGCAGGGCGGAGGAGCCATCAGTCCTCTGAGTGCTGCGGCCGCAGCGGCGGCTGCTGCGGGGAGGGTGGCGCTCTCCGGACACTCTGGCTGCAGCGGCGTGCTCCTGGTCAGCAACCTCAACGAAGAGATGGTTACGCCCCAAAGTCTGTTTACCCTCTTCGGGGTGTACGGTGATGCTCAGCGCGTGAAGATCCTCTACAATAAGAAGGACAGTGCTCTCATCCAGATGTCGGACGGGAACCAGGCCCAGCTCGCAATGAGCCACCTGAACGGCCAGAAGATGTACGGGAAGATAATCCGTGTGACGCTCTCCAAGCACCAGACTGTGCAGCTGCCCAGGGAAGGGCTGGATGACCAGGGCCTAACCAAGGACTTCACCAACTCCCCCCTGCACCGCTTCAAAAAGCCAGGCTCCAAGAACTTTCAGAACATCTTCCCTCCGTCCGCCACGCTCCACCTCTCCAATGTCCCGGAGGACGTGACTGAGGAGGATCTGAGACAGCTGTTCTCTAACGCAGGTGGCACTGTGAAGGCATTCAAGTTTTTCCAAGGCCACAAAATGGCGCTACTCCAGATGTCTACAGTCGAGGAGGCCATCCAGGCCTTGATGGACCTCCACAACTACGACATGGGCAGCAACCACCACCTGAAGGTCTCCTTCTCCAAGTCAACCATCTAGATGAACCACGCCATCACAACCCACCCCAACCCCTTCTCTGACAAATCTCAATGTGTGGTGCTCACCTGTTCAGTCCCCTCGGGGAGACCACAATGATACTCACCTCCTAGGGAAAACATTTGAACCAGTCATTCCTTTTTAGACAATATTGATTATCAAAAGCCCCCCACTCTAGATGTGACTGTAGTTTCTACGATGTCATTGTCGTAAAGCATCACCTGTCTAGGTCCCCTTATCCCTCTCCGCCTTAGTTTGTGTGGTTGGCAAGCTCCCTCCCTATGTTCTTCACGAGAATGAATTGGATTCCCTCTTTTTCTTAGAATGAATCAGCGAAAATGTGCCTTACTCAGCAAAATATTCTCATCGTTTTGCCTCCTTAAGTTTCTAAAAGTGATAGAGGTCTAGGCACATTCTGTTTGGTTGTGGTTTCTGTTTTGTTTTCCCCTCCCCTTTTACGTTACTTGATGTTCACCCATTTGAAATGTAGATTTAATAGTTTTGCTTTTGCGCTTTGTTGATGATTAACCTGATTTAGCGGACTTAGATAAGGAAGCCCATCTCTATTCAGTTGGTTGGGTTGTTTAATCCCAAACAAGTCAAGGCAAGGCCATTTTGTCCGGGTTGAGAATGATTACTGTAAAGGCTGTTGACGCCATTGTACACTTCACCTGCTAAGGATGACTGCTTAGATGTTCCCTTACTGACTGTAAATGCTGTCTAAATGTTTTTCAAACCTTACTTGCGTATGTCAATGTTCCCCTTTTttggtcatttttttttttttttttctttctttgatTGAAAATGGCAGTGAATCTTTTTGAGCATGTACTAATGGGTCATGGTAGTAGTGAAGAAATGTTGCTGTTGCATGCGTCCTACATCCAGATGGGCAATGTGTTCACTGGTCAAAGTGAAGTATGATTTTACATGAGGACGGACTACCTGTTGGGACCAAAGTAAATGTGCCTATAGTCCTACTTTACAATTTAATTTAAAAGAAACTTATTTTACAAAAACAAATGTGGATTATGTGTTTGAGAGGGGGAACAATACAAATCAAAGTCGAACCCTCGCAGAATGTTTCTCCTTGATTTCAATAATCTTCTGTGGTGTTTTTTGGTCAAGAATTACCCTTAAACTACACAGCTTCAGTTGAAGCAACAACGACAACAAAAAGATTGGAATGTGTGGGGAAAAGTTATCAATATTTTCTACATGGATTGAGTTTTTACATCTTAATTGTAATTATCAATATAGTTTGGAAAAGGCACGATTAAAAGCTCATTTTCTACCGAGTGAGTCCATGTTTGATGGTTCCTGCTGTGTGTACCTACTCTGATTTACATCTGTAGCATGCTCAATAAACTTTCCTGTAGCTCTATTCACCCTC

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823662 lncRNA downstream 2095 56272294 ~ 56272996 (-) True G725038
TU823608 lncRNA downstream 22652 56249107 ~ 56252439 (-) False G725000
TU823609 lncRNA downstream 22652 56249107 ~ 56252439 (-) False G725000
TU823610 lncRNA downstream 22652 56249107 ~ 56252439 (-) False G725000
TU823611 lncRNA downstream 22652 56249107 ~ 56252439 (-) False G725000
TU823687 lncRNA upstream 34285 56328662 ~ 56328919 (-) True G725062
TU823690 lncRNA upstream 35935 56330312 ~ 56330584 (-) True G725065
TU823693 lncRNA upstream 43349 56337726 ~ 56366731 (-) True G725068
TU823727 lncRNA upstream 74662 56369039 ~ 56369248 (-) True G725090
TU823715 lncRNA upstream 80276 56374653 ~ 56380866 (-) False LOC110530186
XM_021613047.2 mRNA downstream 378749 55872953 ~ 55896342 (-) False LOC110530179
XM_021613046.2 mRNA downstream 435750 55815384 ~ 55839341 (-) True LOC110530178
XM_036985739.1 mRNA downstream 460163 55799908 ~ 55814928 (-) False LOC110530176
XM_021613042.2 mRNA downstream 460743 55801428 ~ 55814348 (-) True LOC110530176
XM_021613041.2 mRNA downstream 460748 55799908 ~ 55814343 (-) False LOC110530176
XM_021613052.2 mRNA upstream 80211 56374588 ~ 56386152 (-) False LOC110530186
XM_021613051.2 mRNA upstream 80211 56374588 ~ 56386539 (-) False LOC110530186
XM_021613053.2 mRNA upstream 80211 56374588 ~ 56386555 (-) False LOC110530186
XM_021613061.2 mRNA upstream 175764 56470141 ~ 56486902 (-) False LOC110530191
XM_021613062.2 mRNA upstream 175764 56470141 ~ 56486903 (-) False LOC110530191
TU823623 other downstream 42152 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 146803 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 483606 55785517 ~ 55791485 (-) True G724400
TU822777 other downstream 629077 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 878206 55396624 ~ 55396885 (-) True G723966
TU823714 other upstream 80276 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 88752 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 293966 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 535264 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 841764 57136141 ~ 57137113 (-) True G726496

Expression Profile