RNA id: TU823715


Basic Information

Item Value
RNA id TU823715
length 5229
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110530186
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56374588 ~ 56386555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgccataattgaatagataatgctaaacgaggttggaatgttatataaaatcaacaaaagacaatcaatcaatcaatcaataaaatgtatttataaagtccttcttacatcagctgatgtaacaaagtgctgtacagaaacgcagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggccaggaaaaactccctagaaaggctggaacctaggaagaaacctagagaggaaccaggctatgaggggtggccagtgctcttctggctgtgccggatggagattataacagaacatggccaaggtgttcaaatgttcatagatgtcCAACAgggtctaataataataatcacagtggttgtagatggtgcaacaggtcagcacctcagaagtaaatgtcagttggcttttcatagccaatcattcctagtatctctaccgctcctgctgtctctagagagttgaaaacagcaggtctgggccAAGGTAGTCTGGGCCAAGGTAGTCTGGTgatcaggtcagggttccatagcagcaggcagaacagttgaaactggagcagcagcacgaccaggtggactggggacagcaaagagtcatcaggCCAAATAGTCCtgagcacagcccccacaccactagagggatatcttcaaccaccaacttactatcttgagacaaggccgagtatagaccACAAAGAtatcccccacggcacgaacccaaggggggggggtcgccaacccggacaggaagatcacgtcagtgactcaagtgacgcacccctcctagggacggcatggaagagcaccagtaagccagtgactcaggccctgtaatagggttagaggcagagaatcccagtggagagaggggaaccggccaggaagAGACAGCAAGGGCTCCAGTGCCtttcgttcaccttcacactcctgggccagactacactcaatcataggacctactgaagagatgagtcttcaataaagacttaaaggtcgaaaCAGAGTCTACGTCagtcacatggataggcagaccattctctaaaaatggagctctataggagaaagccctgcctccagctgttttcttagatgttctagggacaataaggaggcctgcgtcatacatgtaggtatgtacggcaggaccaaatcagaaagaaaggtaggagcaagcccatgtaatgctttgtaggttaaaaccttgaaatcagcccttgccttaacaggaagccagtgtagagaggctagcactggagtaatatgatggatttttttttgttaattcgacaaaaatctgttgaaatcacactggatgtattattatttttttgatttgcattgggggcatacttatttcactgtacagccttacctatggattgtggatcaatgacatgaggtatcagtctactcagtgacacccagagaacattagcatcgtggctcttattgcaggactctgaaacaactgtgaattgagacatttattgtcaacctatgtgtattgaacaATATTCAAGACGAAAAACAatactgtgtggatgtttttggagtctgataactctgaggaggacgttgagaaaaaaatatcttgggtattgagtagactgttaccccatttcattgatccccaatccttaggtaaagctgtacagtgcaatatgaatgtcaatacacaatatgctgactggggaggtgatttcccACAGTCACAGTCCCACGATAAGAGCTGCAACGCTAATATTTGcataaactcttcacagttgtgttctgtgggtgtcaccgagtagactgaATCCCCATTCCATTGCTTCACAatccaaccttgtttaacattacCTAGTTTAAacatggcatgattccaccaattgtgacctgcatcactttcaaaggggcacttttattttgaaggcgaaccgcaaattccacgattgtgcctaatccttattgtggctagcttcacgaCACATAACCTAGTCCAGTCGACCCTCACTAgtcagatgaagctagctggctgcttataacgttagctttgggcaacagggttaagtagctggctagctatttattttcatgaactgaagttcaatttcaataggcgaacaacaactggctacctagctaatacttactcacaaggattcctaaatcattgctaagaatagtgAAAATGACGGCAGTTTCtattggtcattgttttcaggctggttgtattggtgctagctaggtaccaacctaaagctagctaactaccccagaagttgcggtcaaacaaataatgctttattaccaacgcggtattgtaaacacatcgtttgtggccggtgtttgctcatttgcagacttttttgtacagctttgacagtgctactaaTAGTATTGGTGGCACATGGCTTGCACGTGCATATTCAAAACACACAACATTCtctaatagaactgtgttatttgacgtgtcgaATTTAAAGCTTATTAACCGCAAATAGTGTTattgtcaaatagtgttattgtcaaatagtgttatttgacgtgtgtattttttgacacgcaaagacccaaacggcattccatagtatgttgtgaagctaatagcagtgttTAACTCCGGTAGAGCAGCATCTGAACAATAACGTACTTGGTAAcgttagtgtgtaccggtgctcgaccagtcgcgaaagccaacatcacccaagACAGAGACCGGTTGATtatcaagggcaatgaattccattatcttggctttaatggatttcgcctgtaattttcttactctttcaaatgactgctcgacttgttgactgctccatccacacagcagacgttgtgggctaggttaggaatgctgtgttgcaggtGTAGCACAACATTTTATGCGGCGTCATTAcatcatgtacctacgttatataggtatacacatcagctttgacattggtttttcacatcggcgttaaactagacattgggCCGATACTGATGTTGGCATTTtctttttagctaatatcggccgattccgatatgttcaccgacatatcgtgcatccctaatgTGTGATCAATTAACCTAGTCTTGTGTCTCTAACATGCTAACTATACAGTACATGCAAAAAATGGCCTAAACAAAGAACAGGCCTGTGTCAATTGGCTAGGTACAGAAGGGGGGCCCTTCCTATCTTGTCTGTAGTGGATTCTGTTGTGGTACATTGAGCACATGTTGCCTAATAACAGTATGGACTTACCAGTACTTAGAGGTATGAGCATGCACTGCTGGAATGTTCACCACCACCACTTTTTGTACACATTTTGAAAATGTCTGTGACCCAAGTTTATTAACTGTGTCATAACCCCAGTAAGTGCACCTCAATTTTTCCTTCTTAGAGATCGTACAGTAAGTTTTACGATCATGATTTATCCTGTACTCAAATATTATTGTGAGTACTTCTCTTGCCATTATTTTCTTTGCACTTTGTTCTTTCTCTTTTAGAGCATAGGAATGTTGCCTTATTTTGCTAACTTCCGTCTGGTCGCAGAGCTTTCCACTCCTTGTGTGAATCAGCGCTGGTTCTTTGAAGTGCTTGGTTATCCAAAAAGATCATTACCAAATATGGTCAACGGCATTGCCATGACGGCATCCTTCTTCCTGGTGAGGATAGCGGTCATGCCGCTGTACTACAGCCGGATGTATGCCGTGTACGGGACGGAACCCTTCTACCGGGTGACCTTTGGTGGCCGCTGTGCCTGGATGGGCCCCAGTTTCTGTCTAGACATTATGAACGTGATGTGGATGCATAAAATGGCCCGTGGCTGCATTGGTGTCCTGCGTTCTCCTGGAAAGGTGAATGTGGAAAAGCTGCAGAATGGGAAAGTGCACTGAGGGATAGAAAAAGGCAATGGTGGTGTTATTTTATTGTATGTCTGCTTCAAATGGTTCATGGACGTTTTTGGATCAAATGGTTCATGGACTGGAAATGTCATGAGAGTCCCTAGTATCCCGTGACCAGCCCTAGGTAAATTGCCTACCACTACACTTATCTGCCCAGAATACTTACAATTAAACAAGCGCTAAACTCCTCCACCATGATGGGAGGGGACATTGTAAAAGCCATTGGACTATGTCTCCTCTTGGTCATTACAGTTCGAGAGTAAGTGAATGGACGGTGTGATATCATGGatggaaacagacagacaaatactCTTGTCTGCTGGACCCTTTTGTTTCTAAATTGTTTGTGTCCACTCAAAGGTGTCTTGTGCATATTGCCAAAATGATATGATATGAACGGACATGGACGAGAATGGAAGAGGACCTCACATATTTTTCTAATGTTTATGAAGCTGTAAAGATGGCTCTTGCACAAATAtcatgagatatatatatatatatatatgaacaaAAATAACATATTTACTTACCTAATTACTCATTAAATCTGTGTTTTCACCAGCATTAGAATGTAAAATATGTATATTAATCAGACTCCTACTGAAGTCTCTCTGCTCAGGAGCCTGCTCATGTTtgtaacatacagtaggcctaggAATTATCAGTCATGTGCATAAATTATCAGGGTAGAATAAGACAAACCATAGCAAACATGCCAGATTGTGTCATTTTATCTCTAGAAGTGACCTTACTGAGTGATTTATGATATCAGCCATGGAAGTGCACTTATGTctaaccgacacacacacagtagaactTCACACAAGCAACTTTGCAGAGTTAACAAATGATTGATCATACTTCATTATTAACTGTTGAAACAGAGCTTCGTCATGTGAAATCCCTGTTGGATTTCTGGATGAGAATATGTTATTTATCGTGACATTTACAGCCATGGTAGTTTTAATATTtcattttaaaaaaacaacacattttagtAATGTACTCTTCTTTGAGTAAGTGATAACTAAATGTCCATAGCTGCTTTAAATAGACTTCAGACCAGATACGTGTTTGCTtgtgtctgctgttgagatgtcCTGCTCTCTTGTGGAGACAATGCGGGACTGCAAACATTGTATTTCCCATTTTGCCAAGACTGAAAGTACTCGAAGGGAGTACAGTGGGCAAGGCGCATTGAGCAATATTCATAAACAAATGATTGATGTTAACCTTGGTTTGGTGTAATTCGGTCATCACATTGTTTTGTCTATACTTATGGCTACTTTGCCCACCATTATTACCTCCATctgttgtaaaaaataaaatgtaaaaacgtG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823727 lncRNA downstream 5405 56369039 ~ 56369248 (-) True G725090
TU823693 lncRNA downstream 7922 56337726 ~ 56366731 (-) True G725068
TU823690 lncRNA downstream 44069 56330312 ~ 56330584 (-) True G725065
TU823687 lncRNA downstream 45734 56328662 ~ 56328919 (-) True G725062
TU823662 lncRNA downstream 101657 56272294 ~ 56272996 (-) True G725038
TU823737 lncRNA upstream 21261 56402127 ~ 56402459 (-) True G725100
TU823717 lncRNA upstream 42173 56423039 ~ 56424581 (-) True G725081
TU823753 lncRNA upstream 50720 56431586 ~ 56432046 (-) True G725115
TU823886 lncRNA upstream 80413 56461279 ~ 56461521 (-) True G725223
TU823893 lncRNA upstream 110422 56491288 ~ 56491545 (-) True G725230
XM_021613049.2 mRNA downstream 80276 56275091 ~ 56294377 (-) True LOC110530183
XM_021613047.2 mRNA downstream 478311 55872953 ~ 55896342 (-) False LOC110530179
XM_021613046.2 mRNA downstream 535312 55815384 ~ 55839341 (-) True LOC110530178
XM_036985739.1 mRNA downstream 559725 55799908 ~ 55814928 (-) False LOC110530176
XM_021613061.2 mRNA upstream 89275 56470141 ~ 56486902 (-) False LOC110530191
XM_021613062.2 mRNA upstream 89275 56470141 ~ 56486903 (-) False LOC110530191
XM_036985744.1 mRNA upstream 89275 56470141 ~ 56486903 (-) False LOC110530191
XM_036985745.1 mRNA upstream 89275 56470141 ~ 56486904 (-) True LOC110530191
XM_021613057.2 mRNA upstream 124429 56505295 ~ 56520767 (-) False LOC110530189
TU823623 other downstream 141714 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 246365 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 583168 55785517 ~ 55791485 (-) True G724400
TU822777 other downstream 728639 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 977768 55396624 ~ 55396885 (-) True G723966
TU823713 other upstream 2263 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 207477 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 448775 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 755275 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 905650 57286516 ~ 57305526 (-) True chd7

Expression Profile