RNA id: XM_021613061.2


Basic Information

Item Value
RNA id XM_021613061.2
length 3135
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC110530191
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56470141 ~ 56486904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTTCCTGCTGTTAAATGTCGCTAACGTACTGAGTTAGAAATGAAAACAAGTGAAAAATGCAATCTTGACACATATAGCATGATTTAGTGCAGATAAAGGACATGCGTTTTGTTCAATGTGTAGTCCTTAAACAGTTTATGCATAGAATACTTGCAATGCATATGTCTGATTAAATGAAATTGTGCACCATAGATCATGTTGCTAGCACGCTAGCCAGCTACCTACCCTACCCCAGCATGCATCTCGTTACTCCTTTGGTCGGCAGATGGAAACATGGCGTCGATAAGTAAATACTTGACAGCCAAGAACTCCTCTATAGCAGGTGCCACAATCGTTGCCTTGTATCTTCTCAAGAGGAGAAGACATGCAGCCCAATTAAGTTGGGGGAAAAGATCATCAGAGCTACAGTTGAGCAAAGATGAGGCCAAGCAGGAAAAGACGGTGGTGGACAAGGTGTTCTTTGCACGTGTCCTGAAGATAGTGAAGATCATGGTTCCTGGAGTGTTCTGCAAAGAGTCAGGATACTGTCTCCTCATCGCTGCTATGCTGGTGGCCAGAACCTACTGTGATGTGTGGATGATCCAGAATGGAACCATGATCGAGAGTGCAATCATTGGTCGATCAACAAAAGATTTCAAGAGGTTCTTGTTCAACTTTATAAAAGTCATGCCATTTATCTCACTAGTCAACAACTTCCTGAAGCTGGGCCTGAATGAACTGAAGCTCTGCTGCCGGGTTCGACTCACCAAGCACCTCTATGACGAGTACCTGCAAGGTTACACATACTATAAGATTGGTAACCTGGACAACCGCATCGGTAACCCTGACCAGCTGCTGACCCAGGACGTGGAGAGGTTCTGTAACAGTGTGGTGGACCTCTACTCCAACGTCAGCAAGCCTTTATTGGACATTGGTCTGTACATCTTCAAGTTGACCTCAGCCATTGGTGCACAGGGTCCTGCCTGTATGATAGGATACCTGATGTTCTCTGGGCTCATCCTGACACGTCTGCGGAGGCCCATCGGGAAGATGACGGTCATGGAGCAGAGGTACGAGGGAGAGTACCGATTCGTCAACTCTCGCCTTATCACCAACAGTGAAGAGATTGCCTTCTACAATGGAAACCTGAGGGAGAAGCAGACCATTCACTCTACCTTCCAGAAACTAGTGGACCATTTACACAATTTCATTGTCTTCCGCTTTTCAACGGGTTTTGTGGACAGCATCATTGCTAAGTATATTGCCACTGTTGTCGGGTACCTGGTGGTGAGCAGGCCGTTCCTGAACCACACCCACCCACGCCACCTACACAGCACCCATGCTGAGCTGCTCGAGGACTATTACCAGAGTGGGCGTATGTTGCTGAGCATGTCTCAGGCCCTGGGCAGGATCGTCCTGGCTGGCAGGGAGATGAGCAGGCTCTCGGGGTTCACCGCTCGTATCACCGAGATCATGAAGGTCCTGAAAGAGCTGAACTCTGGGAAATACGAGAGGACCATGGTCTCTCAGCAGGGAGGCAGAGATAGTGAATCGCTAGATAGAATCACCCTGGTCCCAGGAAGTGGTGAAATCATCAACAAAGACAAGATCATCAAGTTTGAGCATACACCTCTTGCAACGCCTAATGGGGACATTCTTATCAAAGACCTCAGCTTTGAGGTGACGTCGGGGACAAATGTCTTGGTATGTGGCCCCAACGGCTGTGGGAAGAGCTCACTCTTCAGAGTCCTGGGAGAGCTCTGGCCTCTGTTTGGTGGCCGTCTCACCAAACCTGAGAGAGGGAAGCTCTTCTACGTTCCCCAGAGGCCATACATGACCCTAGGCTCTCTGAGAGATCAGGTGATCTACCCAGATACAGTGGAGGaccagaggaggaaggggacctCTGATAAGGTGCTGAAGGATTACCTGGACAACGTCCAGCTAGGTCACATCCTGGAGCGGGAGGGAGGCTGGAACACGGTCCAGGACTGGATGGACGTCCTCagtggaggagagaaacagaggatggCTATGGCCCGTCTGTTCTACCATAAGCCCCAGTTTGCCATCCTGGATGAGTGCACCAGTGCTGTGAGTGTCGATGTGGAGGACTTCATCTACAGCCACTGTAGGACGGTGGGCATCACGCTGTTCACGGTTTCTCACAGGAAGTCTTTGTGGAAGCACCATGAGtACTACCTGCACATGGATGGAAGGGGGAGCTATGAGTTCAAACCCATCACCCAGGAAACGGTGGAGTTTGGGTCATAACGATCTTACCATAGCCAAGTATTGCACACAGAGATGGTCCTAAGTAATTCTGCACTTCATGAAGCATAGAGCACAGAGGTCAAGTCCTAACATCTTAATGTTACGCTGGAGTATGAAGACTGAGCGCTCTCTCAATGTCAAGAGAGAAATACCTAAACCTGTACATTTAAAGGTAGGGTCTACAATATGGCATCATCATACACAACACGGTACACTTCCTGCTTACAGAAATAATAAACAACTCAATTTAAGTCTGCTGAGACCGACAGTATTGGTTCTTCCTTAGGGCAGATTTTGAATTCTGTTGTTTATGCCTGGAAACAGGAAGTTGCCCCGCTGTGTATGAGGATGTCATATTGCAGTCAACCATTTACGGACGTGTGTGTCTGTACGGGTGAGTTTTAATTGTATATGAAGCAAATAATGTACTAAAAAGCTAGCCTTACTGATTTTGTTTCTCCCCTGATTTTATTTACGTTAATGTTGCATTGTTTTTAATTATTTATAATGTTCAGTTTTGATGTTAATGAATTGAAATGTCAGAGTTCCATCtagtgatgttttttttaaatgtttgtctAGTGCAGTTAGTTTAAACACTGAAGTGCATTCTTCTTTCATGAAGCCAGTTACTGTAACTGTATTTTAAGCATAGCTAGTCTGACTCAGTCAACTACAATACCtgaaaatgtattgtttttttttgtctcctATAGTAAAATCCCTCAGCTTAGGTTAAGGTACAGTAACTGAACTGTAAGTTGAGCTTTGATTATTTTGTTAAAAGGGGATTGAGGACGTGGACTTTGTTTTCATAGGATAGTTCAAATGCAATTGCTATGAGCTGAACTACACATGAATATATATTTCTCGAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823886 lncRNA downstream 8620 56461279 ~ 56461521 (-) True G725223
TU823753 lncRNA downstream 38095 56431586 ~ 56432046 (-) True G725115
TU823717 lncRNA downstream 45560 56423039 ~ 56424581 (-) True G725081
TU823737 lncRNA downstream 67682 56402127 ~ 56402459 (-) True G725100
TU823715 lncRNA downstream 89275 56374653 ~ 56380866 (-) False LOC110530186
TU823893 lncRNA upstream 4386 56491288 ~ 56491545 (-) True G725230
TU823894 lncRNA upstream 5392 56492294 ~ 56492511 (-) True G725231
TU823895 lncRNA upstream 5779 56492681 ~ 56492916 (-) True G725232
TU823896 lncRNA upstream 8032 56494934 ~ 56495202 (-) True G725233
TU823899 lncRNA upstream 11010 56497912 ~ 56498148 (-) True G725236
XM_021613053.2 mRNA downstream 83586 56374588 ~ 56386555 (-) False LOC110530186
XM_021613051.2 mRNA downstream 83602 56374588 ~ 56386539 (-) False LOC110530186
XM_021613052.2 mRNA downstream 83989 56374588 ~ 56386152 (-) False LOC110530186
XM_021613049.2 mRNA downstream 175764 56275091 ~ 56294377 (-) True LOC110530183
XM_021613047.2 mRNA downstream 573799 55872953 ~ 55896342 (-) False LOC110530179
XM_021613057.2 mRNA upstream 18393 56505295 ~ 56520767 (-) False LOC110530189
XM_021613058.2 mRNA upstream 23091 56509993 ~ 56520767 (-) False LOC110530189
XM_021613059.2 mRNA upstream 23091 56509993 ~ 56522597 (-) False LOC110530189
XM_021613060.2 mRNA upstream 23091 56509993 ~ 56522597 (-) True LOC110530189
XM_036985746.1 mRNA upstream 35991 56522893 ~ 56526802 (-) True LOC110530192
TU823714 other downstream 83625 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 83625 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 237202 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 341853 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 678656 55785517 ~ 55791485 (-) True G724400
TU823957 other upstream 101441 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 342739 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 649239 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 799614 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1318486 57805388 ~ 57811422 (-) True G726885

Expression Profile