RNA id: XM_021613059.2


Basic Information

Item Value
RNA id XM_021613059.2
length 3360
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110530189
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56505295 ~ 56522597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCTAGGTTCAATGTAGCTTTTTGGAGCCTTTATCTGCCGTCCTGCACATTTGCGTCAGCAGAATAGCATGTTACAAATAGATAAGGGCTTTATAACTTATGTAACGTAGCACAATGACAATGTAAACAACGCTAATGATGTTTGGACGCCTCTGAACTCGGTTGGTATCAAGGGTCGAACCTCCCACGTGATGAAAGGCTCAAGAATGGAGTCGGAAGAAGCCATGAGAAATTGTAAAATTGACCAGAAGCGCCAGTTTACTCCAAACAGAGTGGAGCATGGTTATTTCTAGGTAAATAACCGAAATATCAAAACCTTCTCGGATAATCGCTTTGGGATCCCACGCTGTGCACGGGACCGCAGCCAAGCTCTAGTCGGGTACCTGGCGATGCGATGGGAGAGCGAGTACCGCAGAGATGATGCGTTTTCTACTGGATTGCTTGCGGACGCCAAGGCAACGGGCACCGTGCAGTGAGAGGGACAAGGACTTTGTGGAACAGGACGAGTGTGTTGCTTGGAAGACTGGAGAAATCAGAGACCTGCAAGATGCCGTGCAGCAGGAGGGCATtgagctggaggagcagcggggagaCCGCCAGGAGCTGGAGGAGACCCTGGAGAAGCTGGAGCAGCacaggatggagctggaggacCAGCTCAAACTGACCAGGCTGGAGTGCGTCCAAGAGAGCCagcagATTCTTTCCCTGCAGGCGGAGGAGGTGGCCAGGGAAACGAAGGTGGAGGAGTATGAGCGGGAGCTGGCCCGGGCAAGGAGGAAactcaaacagctgaaaatggaGGTCAGACGGGCCCAGGGGAAGGTAGAGGAGGCGGGCGAACGCACCATCCCTCTGGAGGAGTCCATCAGCCAATCATATGAGGAGATTTTACAGGAGGAGCAGACGCTCAGTATACTTCGTGGGGAGCGGACGGGAGACGCAACACTGCCAGACCACCAGCAGGTGGAGCCAATCGACACATCCCCCATCAGCCTCAGGACAGAGGACGGAAATCTTGACGTCCCCGCTGTACCAGCCAGGTCATGGGGCAGGAGCCAATCACTGCCTGTCTATGCTGAAATCCTGGCAAACCTTGGGTGTGCGGCTCGCGCTAAAAACGGATTGGCTGATAcacaagaagaggaggaggagacaactACACCAAGCACACCAAAGCAGATGGATAAGGGAGAAAAGGAAGAGAAAGTGGAAGACGAAGAAAAGATTTCCCAAACACGATCCACCAGTAGCATAGCAGTCGAAGAGCTCGACTTCTACCACCCCGACCCCTTCATTCACTGTGAATCTGAAGATTACCTTTTCAAAGATGACGACCTCTTTGCCAAAACGGATCAATCTGATGATGACCCGTTCAAAGGCACAGACCCCTTCGCTGCAGACATCCTCTTTCCAGAGGGGACAGAGGATCCCTATCCCACCACTGATCCGGATACCCGCCTGGAACTTGGATCTAACGACGAGACAGACAACAGCCTCTCCTGCGCTGAGAACAAagcctccaccggcacccagtgCTTCGAGTCCGAGTTCCCCGACGAGGACGAATCCAGCGACATAGAAATCAGTTACAGCAGGGAGGATCTGGACACTGTTCACACGGACGCTGTTGAACTCTCCTTCGTTGAGCCCCAAACCTTGATCATGACCGAACGCTTAGGTTTCAAGCCCATCTACGCAGCTCAAACTTGTTCCTTGGAAACTGAATTAGATGACGCAGAAGAACCCGGCGTAGCTTCTGGGCGCGAACCCTTCAGTCAAGCATCCAGGGCCAACACCTGGGCTGCTGGACCCAACTTCTCCACCGAATCCGACCCCAATGGATACGAGTTTGACATCAACGCAGTATCCCCTCCTTCCGACATAGAAGAGATTGACATCACTCTTGGATCTATTCCAGTTGACTTTGACCTGGTGCCACCTGGGTATGACTCCGTGGAACCCAGCTACCCTGTTGGGATTCAGGCGTGTGACTCAGAACCTGCCGGAACAGGTGGATGCGACCTTCCTGAACCCAGCCCTCCTGTACCCACCCGCCCGGTCCGTCCACCTAGACGCCTCAAAGGGGGAGCGTCAGCGGACCTTGTGGAAGAGCCAGACACTCCCAAAGCTGAAGGCTGTGATCCAGGTTCTTCCAACCGCTCTGCTGATTCAGAGTTGTACAGTGCTATCGGGATGGACCCTCTTACCAGCTCAGCTGAACACAACAGTAAATTCAGCTTCGGCAACAACAGTTTTGAGCTGAACTACGAGCCCAACTATGAGCCCAGTAGTCAAACTTCGTACAACTATGGATTTAAACTCAGCCCCGAACACCACAGCGAAGAGATCTTAGATCCTTTTGCCGCTGAACTCAGCGATGAAGAAGCTGACAACCAAGCCTCATTTGATCCTTACGAATTTGAGCCTATTGCTCAATCTGAGAACCAAGACATGTTCGACCCTTACGGATTTGGACATACATCTCATGCCACTGACCGAGACACATTTGACCCCTATGGTTTCAAACTCTTAAGTTTTGAGACTGACAACCAAGCTATCGTCGACTTACACAGCGGCGATGATACGAACCTTGAAGACAACAATAACACAAACAAAAGGGACTCCTTTAGCTTCGATTTCAGTAACACAGCTTCAATGGACCCCTATAGTTCAGAACCCAGTAATACTGCAACAATGGATCTCCTTGGTCTGGATCTCAGCAGAGCCAACAGTGTTGCTGAGTCAGACTGTAACAATCCTACAGCGTCTGACCCATTAGGAACAGTACAAACTATGGCAGCAGGAAGCAATCTACTGGACCTGGACCTTGTGTTTGGAAGAAGTAGTTATAGTGATAACCCTGAAGTCGCCACTGACCTCTACCACTGTGAGCCTAGACAGGGAAACCCTGCTGGTCCAGACAACTTAGAATTCAGAGTGAGAGACACCGCCCACTCCGAGTCTGTAGACACCGTTTCTGACTGGACGACTGTTAAGACCAACTCCAGGGAATCCTTGTCCTTTGGCCCAGtcaaacacagcacacacagcctGGACAAATGAACCATTCCCTGGAAAGAAGACACCAGTGTGGCCATGACTCTGCAGTACAGTACAACAATGGGGAAGTAGATGGAAGGATATGAAGCAAAGGCGGGAATGAGTCTCTTTTCTCCAAGCTGGCATGATTCACCTTGACCCCTAGTCAAGGGTTGCAACATTGCATTGATTTGAATGTGATTGATATGTTAATTGAAAATCATAATTTGATGAATCTAATTTGAGTTATTAATTGCCGATGGTTGCTTTGCAGTTATACGGCCTTGGTTTGTTCTACACCCTTTTAAAGTTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823904 lncRNA downstream 9518 56499392 ~ 56500475 (-) True G725238
TU823902 lncRNA downstream 10757 56498572 ~ 56499236 (-) False G725237
TU823911 lncRNA upstream 4993 56527590 ~ 56527810 (-) True G725245
TU823921 lncRNA upstream 9865 56532462 ~ 56532665 (-) True G725254
TU823924 lncRNA upstream 12952 56535549 ~ 56535753 (-) True G725257
TU823927 lncRNA upstream 14585 56537182 ~ 56537402 (-) True G725260
TU823928 lncRNA upstream 17236 56539833 ~ 56541398 (-) True LOC118965616
XM_036985745.1 mRNA downstream 23089 56470141 ~ 56486904 (-) True LOC110530191
XM_021613062.2 mRNA downstream 23090 56470141 ~ 56486903 (-) False LOC110530191
XM_036985744.1 mRNA downstream 23090 56470141 ~ 56486903 (-) False LOC110530191
XM_021613061.2 mRNA downstream 23091 56470141 ~ 56486902 (-) False LOC110530191
XM_021613053.2 mRNA downstream 123438 56374588 ~ 56386555 (-) False LOC110530186
XM_036985746.1 mRNA upstream 296 56522893 ~ 56526802 (-) True LOC110530192
XM_036986847.1 mRNA upstream 17199 56539796 ~ 56541485 (-) False LOC118965616
XM_036986848.1 mRNA upstream 17199 56539796 ~ 56541485 (-) False LOC118965616
XR_005052919.1 mRNA upstream 22347 56544944 ~ 56550688 (-) False LOC110530193
XR_005053055.1 mRNA upstream 25382 56547979 ~ 56548051 (-) True LOC118965677
TU823714 other downstream 123477 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 123477 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 277054 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 381705 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 718508 55785517 ~ 55791485 (-) True G724400
TU823957 other upstream 65746 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 307044 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 613544 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 763919 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1282791 57805388 ~ 57811422 (-) True G726885

Expression Profile