RNA id: XM_036985746.1


Basic Information

Item Value
RNA id XM_036985746.1
length 2189
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110530192
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56522893 ~ 56526802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAATAAGGACATTTGTTCCGAGTAGACGGGGATTGGTCGGACAGACTGGGGGAACCTGTGCATGTTTCGGGGAGCAGGGTGGTCAGATCTTTCATTTGATATTGTTTTGCTAAATCCAAATAATTAGCAAACTACAACATGCTAGTGTCGGTGCTATTGATGATTGCACTAGCCAGTGCTGAACCATCGGTGTATTTTCGAGAGCAGTTTGAAGACGATGCTTGGAATACCCGTTGGGTTGAATCCACCCATAGGTCGGACTATGGGAAATTTGTCCTGACTGCTGGGAAATTTTATGGAGACGCAGAGAAAGACAAAGGTCTCCAGACCAGCCAGGATGCCCACTTCTACTCTTCTTCTGCTCGCTTTGAGCCCTTCAGCAACCAGGGCAAGACCCTGGTGATCCAGTTCACTGTCAAGCACGAGCAGAACATTGACTGCGGGGGAGGCTACATCAAGCTATTCCCCGCTGACCTCGACCAGGCAGACATGCATGGAGACTCTAACTACAACATcatgttcgGTCCAGACATCTGTGGCCCAGCCACGAAGAAAGTTCATGTCATTGTCAACTACAAGGGCAAGAATCACCTCATCAGAAAGGATATCAGATGCAAGGATGATGAGTACACCCATTTGTACACTCTGATCCTGAACCCTGACAACATGTATGAGGTGAAGATTGACAACAAGAAGGTGGAGTCTGGAAGTCTGGAGGAGGACTGGGACATTCTGCCCCCTAAAAAGATCAAGGACCCCGAGGCTGTGAAACCAGACGActgggatgagagggagaggatggaggaccCAGATGATAAGAAACCAGAGGACTGGGATAGGCCCGAGAACATTGCTGACCCTGACGCTAAGCAGCCGGAGGATTGGGATGATGAGATGGACGGTGAATGGGAGCCACCCATGGTCGCCAACCCTGACTATAAGGGTGAATGGAAACCCCGCAGGATCGATAACCCTGACTACAAGGGCAAATGGTTGCATCCTGAGATTGACAATCCAGACTACAGTGCAGACTCTGAGATCTACAGATTTGACAGCATAGGAGTCATTGGCCTGGATCTGTGGCAGGTGAAATCTGGGACCATCTTCGATAACTTCCTGATCACAGATGATGCTACGCTGGCAGAAGAAGTCGGCAATGAGACCTGGGGTCAGACTAAGGATCCAGAGAAAAAGATGAAGGAGTcccaggaggagaaggagaggaagaaactGGAGGCAGAAGAGATGGCGAGGAAAGAGGAGACAAAAGATGAgcctggagaagaggaggaggaagaagaggagactggAGCACAGGACGAAGAGGAGGCAACAGATTCTATAAAGGATGAACTTTAGAGGACTTTGACTTTCTCATAGGGGTGACTTCGTTCTTTGAGCCTGGGGAGAGATTATTCATCATTTCACTTTACCAGCCAGTCAGTCCTCAAAGTAATAATGTTGAGAGAAGGggaggtgaaggagtcatttacTGCAAAATCTGTGCCATTtttttaatttcatttttttaatattAATTTATTGGATTTTAACTTGCTAGTTTATCCCCTAATGAATAAAAAACGGACACTTTTTGTTATTCTATCAAATAATAATTCAGATTTGGTAATCTACTGGCAAATGTTTTTACTGTGATTTTTCTTACAGGCTCGACTTAATATAACCTATTTCTTGTAAGTATGCTTTTATAGTCTGTTGTTCCACCAAATATTACAGATGAAGTCTAATTCAATGGTGCTTGTTTGTTTTGTATACTTAATTCACATTGGGTGGTTGTGTACACAATGTGAATTCTACTTGTTATTCACATGCATAGCGATAGTTTCCCATTTGTTCCATTTCCATTTGCTTTCTAAATTCAGTCACACACTGGAATACATAATATTAGGTAGAATTTAGAAGTAGCATCTGTAACCTCACCTAGACAAATGCAGTCATCAACCTCTTAAATTCCACTGGCATTCAGCCAAGGACTACTGTAGCCAAATCATAAAATTTTTGTCTCTCAAACACTAACCTCATACTTCCAAATGTAGCATAGTGCATTTGTTCTCCCCTTAATTGTTTTTGTAGATATTTGTTACCTTATTTGGGAAATTATGATTACAGAGATTGTTGTGCAaaaatactgtacagtaataAAAAAAGAGAGCTGTTTGGATTTGA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823904 lncRNA downstream 22418 56499392 ~ 56500475 (-) True G725238
TU823902 lncRNA downstream 23657 56498572 ~ 56499236 (-) False G725237
TU823911 lncRNA upstream 788 56527590 ~ 56527810 (-) True G725245
TU823921 lncRNA upstream 5660 56532462 ~ 56532665 (-) True G725254
TU823924 lncRNA upstream 8747 56535549 ~ 56535753 (-) True G725257
TU823927 lncRNA upstream 10380 56537182 ~ 56537402 (-) True G725260
TU823928 lncRNA upstream 13031 56539833 ~ 56541398 (-) True LOC118965616
XM_021613059.2 mRNA downstream 296 56509993 ~ 56522597 (-) False LOC110530189
XM_021613060.2 mRNA downstream 296 56509993 ~ 56522597 (-) True LOC110530189
XM_021613057.2 mRNA downstream 2126 56505295 ~ 56520767 (-) False LOC110530189
XM_021613058.2 mRNA downstream 2126 56509993 ~ 56520767 (-) False LOC110530189
XM_036985745.1 mRNA downstream 35989 56470141 ~ 56486904 (-) True LOC110530191
XM_036986847.1 mRNA upstream 12994 56539796 ~ 56541485 (-) False LOC118965616
XM_036986848.1 mRNA upstream 12994 56539796 ~ 56541485 (-) False LOC118965616
XR_005052919.1 mRNA upstream 18142 56544944 ~ 56550688 (-) False LOC110530193
XR_005053055.1 mRNA upstream 21177 56547979 ~ 56548051 (-) True LOC118965677
XR_005053057.1 mRNA upstream 21956 56548758 ~ 56548841 (-) True LOC118965679
TU823714 other downstream 136377 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 136377 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 289954 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 394605 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 731408 55785517 ~ 55791485 (-) True G724400
TU823957 other upstream 61541 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 302839 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 609339 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 759714 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1278586 57805388 ~ 57811422 (-) True G726885

Expression Profile