RNA id: LOC118965627


Basic Information

Item Value
RNA id LOC118965627
length 533
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC118965627
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56576857 ~ 56579645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAGCCCCTCCTGGATGCAGTGCTCCAGTCAAAGAAAGGCATAAAGCTGAACTTCAAAAGCATTCAGGCGGCGACTCCCTCCCTAGACTTCCTGAGCATGACAAACCAGACTAAAGGGATGAATCGACCAGTGTGGCTGAATACTGACATCCTCCCTGGGTCCAACGTCGCGGCCTTCTGACCTGTCATTAACGGATGTGAGTGAGTAGCCAGGAAAGAGCAATCCTATTCGCCAGATGTACGCCATCATCGAAAATGCCCCACAGAAAGTCACCTTTCCCCTCCACGCTGTAATGGCCAGAAATGGACGGCCTCTCAACAGCTGGCTGCTCAGTCAATCGCCAAGGAGCTTGAAACGTTTCTCGCAAAAAAACAATAGTGTGAACGACCTGCTGTTCGTCAGGGACAAACCCAACCTTGAACGGGTCTACTACCTGTCCCAGTTCAAAGAAGCTGCCAAGAGCAGAGATCGGCCGAAAAAGTTATACCCTGGAGGAGACCTGATTTGACTAATTTCAGCCAAAATATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823943 lncRNA downstream 21686 56554346 ~ 56555276 (-) True G725268
TU823942 lncRNA downstream 23100 56553580 ~ 56553862 (-) True G725267
TU823912 lncRNA downstream 26296 56547496 ~ 56550666 (-) False LOC110530193
TU823913 lncRNA downstream 26296 56547496 ~ 56550666 (-) True LOC110530193
TU823928 lncRNA downstream 35564 56539833 ~ 56541398 (-) True LOC118965616
TU823954 lncRNA upstream 4300 56583746 ~ 56583845 (-) True lrrc53
TU823959 lncRNA upstream 11657 56591103 ~ 56591352 (-) True G725282
TU823961 lncRNA upstream 13337 56592783 ~ 56593012 (-) True G725284
TU823966 lncRNA upstream 17805 56597251 ~ 56597872 (-) True G725289
TU823976 lncRNA upstream 25821 56605267 ~ 56605699 (-) True G725299
XR_005052919.1 mRNA downstream 26274 56544944 ~ 56550688 (-) False LOC110530193
XR_005053056.1 mRNA downstream 27383 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 27630 56549263 ~ 56549332 (-) True LOC118965684
XR_005053037.1 mRNA downstream 27875 56549011 ~ 56549087 (-) True LOC118965658
XR_005053057.1 mRNA downstream 28121 56548758 ~ 56548841 (-) True LOC118965679
XM_036985749.1 mRNA upstream 3580 56583026 ~ 56588553 (-) False lrrc53
XR_005052921.1 mRNA upstream 9338 56588784 ~ 56601317 (-) True LOC110530944
XM_036985752.1 mRNA upstream 90461 56669907 ~ 56763301 (-) False LOC110530945
XM_036985753.1 mRNA upstream 90461 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA upstream 90461 56669907 ~ 56763302 (-) False LOC110530945
TU823714 other downstream 190446 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 190446 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 344023 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 448674 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 785477 55785517 ~ 55791485 (-) True G724400
TU823957 other upstream 8897 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 250195 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 556695 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 707070 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1225942 57805388 ~ 57811422 (-) True G726885

Expression Profile