RNA id: TU823951


Basic Information

Item Value
RNA id TU823951
length 274
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC118965627
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56576857 ~ 56579645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATAGAACAGAGAAAGAATGTCTGAAGAAGTGAACGATGCATGGAGGAAGAAACCATTTGAAGAAGGAAAGAAGAggaccagaggaccagaggagaTATATCCGATGCTTTACTAAAGAATAGTAGATCATGCTGTGTCAGTGTAGGTCTCCTTGTACTGCTTCtgaccaccaccatcacctctgCCGTTGACTCAAAATGCAGGTAACTCAAACTTCTTATTTTGTTTCCCTTTTTCAAGACAAATTCACCAGCATACAGTAATCATATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823949 lncRNA downstream 2051 56576857 ~ 56577321 (-) False LOC118965627
TU823943 lncRNA downstream 24096 56554346 ~ 56555276 (-) True G725268
TU823942 lncRNA downstream 25510 56553580 ~ 56553862 (-) True G725267
TU823912 lncRNA downstream 28706 56547496 ~ 56550666 (-) False LOC110530193
TU823913 lncRNA downstream 28706 56547496 ~ 56550666 (-) True LOC110530193
TU823954 lncRNA upstream 4101 56583746 ~ 56583845 (-) True lrrc53
TU823959 lncRNA upstream 11458 56591103 ~ 56591352 (-) True G725282
TU823961 lncRNA upstream 13138 56592783 ~ 56593012 (-) True G725284
TU823966 lncRNA upstream 17606 56597251 ~ 56597872 (-) True G725289
TU823976 lncRNA upstream 25622 56605267 ~ 56605699 (-) True G725299
XR_005052919.1 mRNA downstream 28684 56544944 ~ 56550688 (-) False LOC110530193
XR_005053056.1 mRNA downstream 29793 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 30040 56549263 ~ 56549332 (-) True LOC118965684
XR_005053037.1 mRNA downstream 30285 56549011 ~ 56549087 (-) True LOC118965658
XR_005053057.1 mRNA downstream 30531 56548758 ~ 56548841 (-) True LOC118965679
XM_036985749.1 mRNA upstream 3381 56583026 ~ 56588553 (-) False lrrc53
XR_005052921.1 mRNA upstream 9139 56588784 ~ 56601317 (-) True LOC110530944
XM_036985752.1 mRNA upstream 90262 56669907 ~ 56763301 (-) False LOC110530945
XM_036985753.1 mRNA upstream 90262 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA upstream 90262 56669907 ~ 56763302 (-) False LOC110530945
TU823714 other downstream 192856 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 192856 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 346433 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 451084 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 787887 55785517 ~ 55791485 (-) True G724400
TU823957 other upstream 8698 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 249996 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 556496 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 706871 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1225743 57805388 ~ 57811422 (-) True G726885

Expression Profile