RNA id: XM_036985749.1


Basic Information

Item Value
RNA id XM_036985749.1
length 3787
RNA type mRNA
GC content 0.49
exon number 4
gene id lrrc53
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56583026 ~ 56588553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGACCACCAGGGCCCTGATGCTGACCGATGGCGCCATCGTCTCTGTGGACCGCCACTTCCTTTCTGACATGTCCAACATGACCGTGCTGTCCCTGAGCCACAACGCTATCACCACCCTCACCCACGACGCCTTCCAAAATCTCACCATCCTCCACACCCTCCTCCTGGACCACAACCACCTCTCCAGCCAGACCCTGGACAGGGCCACCTTCTCCTGGCTGCCCAGGTTGGAGATCCTCCAGCTGGGGAACAATGCCCTGAGGGAAGTCAAAGGCTCCTGGTTCCACGCCGCCAGGGCCCTGCGGACACTGCAGCTGGGGGGGAACCTCCTCACCAGGCTGGACGCCACTACCTTTGCCTCGGCCGACCTCCGGGCGCTGGAGAACCTGGATCTGTCCGATAATCTGATAACATATCTGGGGAGGGATAGCTTCCGGGGCCTGCCGGGGCTCCGTAGTCTGGATCTGTCCAGGAATCAGCTCCGAAACGCCCTGCCTGAAGCATTTTCCTACCTGTCTTGGCTAACTAGTCTCAACCTGGAACTGAACAGGTGGAACTGTACGTGTGAGCTGAGGGAGCTGGCGTCTTTCCTCACCAGCTATATGGAGGCTCCGGATAAGGTGCTGTTCAACGGGCGTAGGATGGTCTGTGTGAGTGCTGACAACCCGGCAGTGAAGACGGTGCTGGAGCTGACGGAGGCCAACTGTGTTCCACCCAATCAGAACATCACAGTGCAGGTGGAGGCCAAGAACTCCGTCTCTCCTCAGCGCTACACCAGAGACCTGGCTCTGGCCGCTGCCTTCTGCTTCGCTGGTGGTGTTGGACTCACCCTAGCTGTGGTGTACATAATTTACCGCAAACTGGAGACGAACAAGAGAGACCGGACTGGAGctaaggaggaggagaataggaggACAGCACCCACCCAAACAGTCCCCCAGTGGGATCCGATCAGGGAGAACCAAGCCCTTCACCTGGCTCAAATGGGACTGGAAACCAAGCTGATGCTCCCCAATAGCAACCAGCAAGGCAGCCACCTTCAGCtctgggaaagggagagagccaTGTATGATCTGAGGATGGGTAAAGACGGCCGCCATTTTACACGCCCCCACTGTGGCCCTGCAGTCACTGGGTCTGCAGTGGAACAGGGGGGAGGAGACGAACACATGAACACCCTGGACATGCTCAGGCAGGGAGGAGCCCAGCCCAATAAGATGGGGAGTCTGGCCAtgacagatgagaggaggagacatgTGCCAACGCAAGCACTGATCTCGAAGATGGAAGATCTAAGAGGTCAAAGGTCATTCAACAGGCCACCAGAGGGTCATCAGGAGTTACTCGATCACCAACAGGGTTATAAAAAACATGGTCCTAATGGCAACAACCAGCCATTGGGTGGCAGCAACAGCTACTTTTCACCTGCTCAAAGAAACATGTCCACACATAAAGGTCTAAGAGATGAGATGGCAAGGCCTGGAAATTACATTGACAACAAACAGTCAAATTTACATTTCCAACCAGAGGGTGGCAGACCTGTGACTGACTATCAACCCCAAACTGCCAGCTGTGTGAACTGTCACAGAACCTATGagtacagacagccaggggataAAGCCAGGGATGTTTCATATGGACTCCATGCAAGAGAATCTGCTGGATATGAGGGATTCCCCAACCACAACCAACTGACAAGGCAACATATGGGAAAGAACATGAACTACAACCAGCCTAATGTGGACATCTATGCAAAGCATGCAAGTGAGCAGAGGAGTGTGACCTTTGACTTGGAAAGACCTCGAGTGCATGTCGTCGATGTACAAAAGATGAACCGTGATAGTGAAGGCAAACATGACAGGATTCAAAGTTCTAGGAAGGCGGAATATGGTGACACGCAGACACTGCGCTATGAAGGCAGTGGACGATCTGCGAGGAGTAATGCTCTTGAAAGAGAAGACAACTCTAAAAGGCATAAACATAAAGTCCAGTCAAGTGGTTTACTAAAAGTAAAGCTCAACCTTAACCCACTTAAGAAAAGCAAGGTCCATCCAAGGAAAAACAGCCACCAGAATCTAGAACAGGGCGACAGAGAACCAACCAACTCCAAGAACCGAAAACAACTGAAAACGGGGGGGAAAGATGTCAAAGGCAAAAGGCACCAACAGGATGAGTCTGAGTCTAAAGGAAAAACAGACAAATCCAGTAAAGGAAACTCGACTGCCAAAAACAAAGCCAATCAGACATCCAAAAATAAATCTACCGTTAGCAAGTCTAAAGAAATTGATGATAATTATGAAGATAATGAGTccgaagaggaggaagagaaagaagatcCAGTGCCACAGCAAAACAAGGCATCCTCCAAGCAAAAAAAGACAACCtcaaaatcaaaacaggaacaccAGGAAGGCTCAAATGACCATCCCAAGAGTAGAACTGCTCAAGATCAGAAGAAGGCCGACATCTCACAAAATAGAACTGGAGGAGTAACTGAGGAATCTGGTGAAGCACCTATACCAAGCAATTTGAGTCCTTACCAGTCAGACCCCAACAGAGCTGGTGGTAGTTCAGCCAATGGGCAGCAGGTGAAGCAATACAAAAATGGACAGGGCCAAGCACTCATCCCTGAGACACCCCAACACCCCCGTTGCCTAGGCGATGGAGTGGTTCTTCAGAGGGCATTGAGTAACCCACAACTGTCAGCAACACACCCCCTCACAGGAGTGGAAATGACTTCCAGTTACAGTAACCTTCCTGTGCAGGGAGGGAACTCTACACTATTACAAAACACTGTTGCTCCAAACCCTGCTTACGGTGGTAAATTACAGCCTCAAAGCTTGAGCAGACCAGGCAGTTTAGACAATTTACAGGCTCAAAGCCTGAGCAAACAAGGTCGTTTAAGTCCTCCACCTTTACTGACTAACATCCCACACACATTCCCACTATACACAGGCAATGTAGGGAGCTTGCCTGTAAATCCATTTATCCCGCTGTTGTCACAGCCAGTTTCAGGAAACTTTAACCAGGAGGCCATGATCGGCTCTCAGCCAACCCAGTTTCCAGCACTCCAAAGCGTGGAAGATCTCACTCTGCTTGCCCAGGGTCCTGGATCACTAATTGAAAAGAATATCTCTCCAATTGCCCAGGGTTCTGGCTCACTAAATGGGGAGAGTCTCTCCAACAACAGTATGAACGCAGCGACCGCCCGTTCCACAGGAGTACCTGTCCTCAGCAAAAGGCTCACCCAGAAGGATTAGACTGGTGCTGCCTGAGAAAACCACTAACAGACCGCCAACTGCTCTGGAGAGGGAAATCAGATAAGTGGATTTGAATTGTCCTATTGTGTTTCCTTGTGGGTTCAAAAATAAGGGATAGCTCAAAATGACCGCTTCATCTTAATGCTCAAGTGAACCTAGAACGATGCCCTCTATTACAGTGATAGAACTTCTCAACATACTCTACGTCATGTTATATTGAATGTCAtgtgaaaatgttatttgtcCACTGCTTATTATTCTGCCTAGTTGCTTGatcataaaatacaaatatatatatatatatatatatttttttttaaacatactgtacatgaaaTATTTACCGTATTTATTTGTCAGCCAATGCACTTACTCAACCCGTCATCCTATGTTTAACACCTGACTCAAGGTGTTATGAATGATTTAATGCTGAAGTTGTCAAGTGTGTGCATTGGTAGATAACTTGTATTTTTATCAATTCTGTTTTacacaaataaaacatttgaataaaCATGGAAATAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823951 lncRNA downstream 3381 56579372 ~ 56579645 (-) True LOC118965627
TU823949 lncRNA downstream 5705 56576857 ~ 56577321 (-) False LOC118965627
TU823943 lncRNA downstream 27750 56554346 ~ 56555276 (-) True G725268
TU823942 lncRNA downstream 29164 56553580 ~ 56553862 (-) True G725267
TU823912 lncRNA downstream 32360 56547496 ~ 56550666 (-) False LOC110530193
TU823959 lncRNA upstream 2550 56591103 ~ 56591352 (-) True G725282
TU823961 lncRNA upstream 4230 56592783 ~ 56593012 (-) True G725284
TU823966 lncRNA upstream 8698 56597251 ~ 56597872 (-) True G725289
TU823976 lncRNA upstream 16714 56605267 ~ 56605699 (-) True G725299
TU823986 lncRNA upstream 25399 56613952 ~ 56614394 (-) True G725309
LOC118965627 mRNA downstream 3580 56576962 ~ 56579446 (-) False LOC118965627
XR_005052919.1 mRNA downstream 32338 56544944 ~ 56550688 (-) False LOC110530193
XR_005053056.1 mRNA downstream 33447 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 33694 56549263 ~ 56549332 (-) True LOC118965684
XR_005053037.1 mRNA downstream 33939 56549011 ~ 56549087 (-) True LOC118965658
XR_005052921.1 mRNA upstream 231 56588784 ~ 56601317 (-) True LOC110530944
XM_036985752.1 mRNA upstream 81354 56669907 ~ 56763301 (-) False LOC110530945
XM_036985753.1 mRNA upstream 81354 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA upstream 81354 56669907 ~ 56763302 (-) False LOC110530945
XM_036985755.1 mRNA upstream 81355 56669908 ~ 56763300 (-) True LOC110530945
TU823714 other downstream 196510 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 196510 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 350087 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 454738 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 791541 55785517 ~ 55791485 (-) True G724400
TU825127 other upstream 241088 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 547588 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 697963 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1216835 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 1231494 57820047 ~ 57846689 (-) True G726900

Expression Profile