RNA id: XM_036985755.1


Basic Information

Item Value
RNA id XM_036985755.1
length 3655
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC110530945
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56669907 ~ 56763302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTCCTTGCATCTCTAGGGAAAcgctgggagagaggaggaatccTATAAACTTGGAGCCAAATACGCGACTGTTCATTCACATCCATGCCATCGCTCTACACATTAGACAATTCCATCGTTCAAAGTGAAATGGCAAGAAAATCGGACGTCCCTTCCCCTTATTACGGAGAACCAAGCAAGTTTGACCCCACATTCAGAGGACCAATCAGCAATAGaagcTGTACAGACGTGTTTTGCTGTGTGATCTTCATCATCGTCATCCTTGGATACATAGCACTGGGGACTGTGGcGTGGCTACACGGTGACCCCAGGAAGGTGATCCACCCTACAGACAGCTACGGACAGTTCTGTGGGCAGAAGGGTACCCCAAACACGCTTAAAGGATTACGATGGAGTTTAGTCTGGAACACGTGTCGGGGGGAGACTACACCATCTCAACCATTATACTGAAATACTGGAGAGTATCATCCTGAAATTTACCAAAAATGCATTGAGATATTAAGAACAGAAGGGAAGAGATAGTTGGCCATTTTAACATCATTGTATGTGGGACTGTTACATCATTGTATATGAGGGCTTTTCTTTGAATGTGTGCTCTGTACTCTACAGCCACCTAGTGCTAATACTGTATCAGCACTgtgtcaatgtttttttttctctctataGAAAAAAATCCATACTGTTCTACTTCAATATCCTGAAATGTGCCAACCCTGCTGTCCTCATCAACCTCCAGTGTCCCACCACTCAGATGTGTGTTTCCAAGTGCCCGGACAGATTTGCAACCTACACAGATATGCAGTTGCAATACCAAATCACTGCAGCCCCCTGGGAATATTACAGGCTGTTCTGCAAACCAGGATTCAACAACCCAACAAAGCCTGTTGCACAAGTGTTACGAGACGAGGACTGTCCATCAATGATTGTGCCTAGCAGACCATTCCTACAGCGTTGTTTTCCTGACTTCATCACTCTGAATGGAACCCTGACGGTGGCCAAAAGAACCCACTTCAAAGATGCCCTGGACAAAGCCCGCAGTGTGACTGAACTAAGAGACGCCGCCAATGGCATCACAGGTCTGGTGGATGCTAAGGAGGTTGGGATGAAGATTGTGGAGGACTACGCCGCCTCATGGAACTGGATCTTGATAGGTCTGGTGATAGCACTGGTGGTCAGTCTGATCTTCATCCTGCTGCTACGTTTCACTGCCGGACTCCTCCTCTGGTTCACCATCATCGCCGTCATACTGGTGATCGCTTacgGGATATGGCACTGTTACCTGGAGTTCTCCCTCTTGAGGCAGCAGCCCGGGGCAGATGTGACCATCGTAGACATCGGCTTCCAGACAGACGTCACGGTTTACCTGCATCTCAGTCAGACATGGCTCATCTTCTTGATAGCTCTGTGTACCATAGAGGCCTCCATCTTGATCATTCTGATCTTTCTGAGGAAGAGAGTATGGATCGCTATCGCTCTACTGAGGGAGGGAAGCAAGGCTGTTAGCTACATCATGTCAACACTTTTCTACCCAATCATCACCTTCCTGCTGCTGGCCATCTGCATCTCCTACTTTTCCGTCACCTCTGTATTCCTGGCCTCCTCTGGAGATGCCATCTATAAAGTAATGGCTGCTGAGCCCAACTGCATGTACGCAAACAAGACATGCGATCCTGAGACTTTCAACAAGACCAACGTGTCCAAGACGTGTCCGGGCGCCCAGTGTACATTTGCGTTCTACGGCGGGGAGACGCCCTACCACCGCTACCTCTTCATCCTCCAGCTGTCCAACCTGCTCATCTTCCTGTGGCTGGTCAACTTTATCATCGCCCTGGGCCAGTGTACCCTGGCTGGGGCCTTCGCCTCCTACTACTGGGCCCGGAGGAAGCCCCAGGACATCCCCACCTGCCCCCTGTTTTCTTCATTTAGCAGGGCCATACGGTATCACACTGGCTCGCTGGCATTTGGTGCTCTGATTCTGGCCCTGGTTCAGATGGCTCGAGTTATCCTGGAGTATCTAGATTCAAAACTCAAAGGTGCCAGTAACGTGGCAGCACGCTTCCTGCTCTGCTGCCTCAAATGCTGTTTCTGGTGTCTAGAGCGCTTCATCAAATTCATGAACAGAAATGCTTACATTATGATTGCAATATATGGGAAGTGCTTCTGCACGTCAGCTCGAGATGCCTTCTGCCTATTGATGAGAAACGTAGTAAGGGTGGCGGTACTGGACAGAGTGACAGACTTCCTACTGTTCCTGGGGAAAGTGCTAATAGCAGGGAGTGTAGGCGTCATAGCCTTCTTTTTCTTCACACACAAAATACCAATTGTTCAGGAAGATGTGCCGACCTTGCATTACTACTGGGTACCTCTACTGACGGTGATATTCGGGTCCTATTTGATCGCTCATGGATTCTTCAGCGTCTATGCAATGTGTGTGGACACgctgtttctgtgtttctGTGAGGACTTGGAGAGGAACGACGGGAGCCCTGAGAAACCCTTCCTCATGTCTGCTGAGCTGCACAGTATTCTGAGAAAAACTGAGCACCACTGAGGAATGCAACACTCTCCTACAAACTAATAGCTTTACTTCTTCCAAGTTATTTAGCATGCTTTAAACTGAACAGAGCTCAACTCTGGCTACCTACACTATGCTGTCTATCAGCTAACAAGGAGATATCAGTCCCTAATGGAGAATGAGACCACTGACTGTGACTTTTGCAACTCAGAAACTTCGAAAGTCTTCAGAACTAACATTGACTGATTTTGAGAGACTCATACGAACACTTACATTGACTATGACATGTGTGATCATTAGAATAACTGTTAGACCTAGAGAATCGAACAATGAGACTAATAGTGTGGCCATTAGACTTTGCTACTGCCTTACCTCAAGACTAGGGACTGACAGGCAGGAACTATTTTGGAACAAGTTCAGGTGGTCAGACTTCACTGTGACTTGTGCTGATACTGAAACCAACGTGTAACTCTCTGgtccagcgagagagagaaacacttcTGGTTTGCTCCAAACAGATCAGAGACTATGCATATCCAACATGCAGTACACTACTGTATCATCCCTAGCATCATTATTAGTCCTCAGCAGCTGTACTGTAACTGCAGTTTACATGGACGATGGCCCTTACTGCAAAAACAATCACGCCATGAACTTCCATATTTAGAACAAAAGGAACCTTTTGGGTGCAGCAGACTGACAGAACTCTAAATTGTAGTCCGACTAATACTTGTTCTGCAGACTTTTAGCTAAATCAACCAGTTGATTTATGCTACTCAAAGTCAATATTGGGTACTAATGGAGTTCCAAATATTCAGCCACTAAAGGTTAAGCAACAGTGTCAAGGACAATCATGATCAAATTCTGCCCTATATCCCACTACTGCAGAAAACAGTGCAGTTTGCGGTCAAAACCTGCATCTGTGATGACCTTTACACCCACACATGGGCTCATGTAATGTATAGCACGGGTAGCCTACATTATGTGTGTGATAccctacatgtacagtaccagtcaaaagtttggacatacctactcattccagggctccagggcttttctttattttattatttttactattttctacattgtagaatagtgaagacatcaaaactatgaaataacacatatggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU824023 lncRNA downstream 28119 56641542 ~ 56641789 (-) True G725346
TU824020 lncRNA downstream 31143 56638125 ~ 56638765 (-) True G725343
TU824006 lncRNA downstream 38663 56630989 ~ 56631245 (-) True G725329
TU823998 lncRNA downstream 44756 56624680 ~ 56625152 (-) True G725321
TU823988 lncRNA downstream 54475 56615114 ~ 56615433 (-) True G725311
TU825096 lncRNA upstream 2806 56766106 ~ 56766593 (-) True G726295
TU825078 lncRNA upstream 16224 56779524 ~ 56779760 (-) True G726279
TU825077 lncRNA upstream 19079 56782379 ~ 56783046 (-) True G726278
TU825111 lncRNA upstream 50559 56813859 ~ 56819026 (-) False LOC110530946
TU825113 lncRNA upstream 55803 56819103 ~ 56827668 (-) True LOC110530946
XR_005052921.1 mRNA downstream 68591 56588784 ~ 56601317 (-) True LOC110530944
XM_036985749.1 mRNA downstream 81355 56583026 ~ 56588553 (-) False lrrc53
LOC118965627 mRNA downstream 90462 56576962 ~ 56579446 (-) False LOC118965627
XR_005053056.1 mRNA downstream 120329 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 120576 56549263 ~ 56549332 (-) True LOC118965684
XM_021613077.2 mRNA upstream 19978 56783278 ~ 56793172 (-) True LOC110530198
LOC110530946 mRNA upstream 51426 56814726 ~ 56827689 (-) False LOC110530946
XM_021613078.2 mRNA upstream 65499 56828799 ~ 56840147 (-) False penka
XM_021613079.2 mRNA upstream 107901 56871201 ~ 56881832 (-) True bpnt2
XM_036985756.1 mRNA upstream 133286 56896586 ~ 56946790 (-) False LOC110530203
TU823957 other downstream 80637 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 283392 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 283392 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 436969 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 541620 56120203 ~ 56128288 (-) False G724943
TU825127 other upstream 66341 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 372841 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 523216 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1042088 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 1056747 57820047 ~ 57846689 (-) True G726900

Expression Profile