RNA id: XM_021613077.2


Basic Information

Item Value
RNA id XM_021613077.2
length 2312
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110530198
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56783278 ~ 56793172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAATGGAACAGGACTAGCCTCCGTGATTTGCAGAAGGGATAAGTAGGAGGAACCATGCTGAAAGTGCAGATAAACCCAATTGAAGAGCTCATCACTCTAAATGAAGATCTAAGTAGAGAAAATCCTGTTTCACTGCgtgtcttttttgttgttgttgtttcgaTTACTGTGCACCTTGACACGGAGTGCAAAGGTCGgttaaagacccccccccccccagtgctgAAAGGAGGCGATAGTTGTTACAAAATATTCAAGGTTGAAGCTGATGTTCTATTGAGGGGCCAGCAAAATGAATTTCCTCCTGGAAACCCTTCAGTTGATTTTAATGTCCATTTATTACAACATAGAGGCATTTGTCAGACTGTTCATCCCATTTAAGAAGAAAAATGTCACCGGGGAAATCGTCCTGATCACGGGGGCGGGCAGCGGCATTGGCCGGCTCATGGCAGAAAAGTTTGCCAGCCTGGGCGTCTCTCTGGTTCTATGGGATGTCAACCAGGAGGGCATGAAGGAAACTGCAAGACTAGTGAAGGAGAAAGGGGCAACTAGGGTCCACTACTACATGTGTGACTGCAGTGACAAGGCTAAAGTCTACAGAGTGGCTGACCAGGtcaagagagaggtgggggatgtgAGCATTCTCATAAACAACGCTGGCATCGTCACAGGCAGGAATTTCATGGACGCGCCAGACTCCCTCATTGAGAAAACCATTGAAGTAAACACCATGGCACACTTTTGGACTTATAAAGCCTTCCTCCCAGCGATGACTGCCAACAACCATGGTCATCTGGTCAGTGTTGCTAGCACAGCGGGTATGATTGGTGTCAATGGACTAGCAGATTACTGTGCCAGCAAGTTTGCTGCTATTGGCTTTGCTGAGTCTGTGGCTCTGGAGCTGCTGGCAACGGGGAAGGATGGTGTCAAGACTACCATTGTGTGTCCACACTTCATGAACACTGGCATGTTCGATGGCTGCAATTCTAAGTGGCCTCTCTTGGTGCCTGTCCTGGATCCAGACTACGTAGCAACGAAGATAATTGAGGCCATTTTAACTGACCAGGTCTACCTTCTGCTCCCAAAGAGCATGTATATTCTCATGGGCATGAAGAAGATTTTACCCTTTAAGACTGGGAATCTGCTGGGGATGTACTTGGGAGCGTTCAACTTTATGGATGCCTTCAAAGGACGCGTCAAGAAAGAGGCGTAGTGAAGAAGACGAGAGCAACCACACATACTAAGTACATTTTGTCTCAGACTCAAAGGTGATTAATACGGcatatcatgtttttttttcccccttaaATGTTTCTTTCTTTAACTAATTTTAGTGTATGACAAAGCCTACGTGCTAGTTTACATCGGCAGACGAGGGATACGTGTAGGCTATATAAGGTAATAAAATACTGCTAAATATGTAACGAATGTATGACCTCAATATGTATTTTCATAGCATCAACACAAGTAGACTTGAGTGTGCTTTTTGGATCGACACACTCAATATGAAATGTTTTCACGAGTTATAGTCACGTCATGAAGTTCACACTGTATGTTATCTCCTTACACTGACACAGGCTCAATAGAAAAATGTGGTTCCTTTTTCACTATCATTCAGTGGatactgtcccccccccccccccccaccccacacacacacacacacacacactttataatGCTTTGGCCTGAAGCAACATTGGAAGGGTTTGTATTGTCGAtgcactttttttttgttgtgtgtttttCTTTATACACCCATTGTTGGGTATTACGTAATTGTTCACATGGGTGTTGTAGAACATATTGTGCATGTACTAATCTAACAGCCAAGTAGAGAAACTCAGGAAAAAGTGTCATGTAAGGGATCATTATCTGTGTGCTGGATTAGTTTGTCTACAGTAGCCATCGAATATGGTTTACTCTATCGCCAATAGGAATGTTATGATAAATTATAGTATGTACCAAACAAAAACACTCATTTTCCAAACTGTTATTCTCTTAACTGGACCACCTACCCCTTTTTTATATTTGAATTTACTGACAGATATTTATTTATTGCTTAATCATGTACAATGTTTTACTTTGACATTGAAGATGAGATGACTGCATGACTTAACtaattttatttacattttctcATGTTTACATTTTAATAACCACAATAGCATTGTTTACATGTAACAATGTTGGTATTTGAATAAGTACTTTTAAGAGTAAAGGTACTTATTTAGGTTTGCTCTTGAAAAATAAAGTTAGACATTTGTCTTATCAGGTTATTTTCCCCTAATGGCTCCCATGCTTCTAGAA

Function

GO: NA

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825077 lncRNA downstream 232 56782379 ~ 56783046 (-) True G726278
TU825078 lncRNA downstream 3518 56779524 ~ 56779760 (-) True G726279
TU825096 lncRNA downstream 16685 56766106 ~ 56766593 (-) True G726295
TU824023 lncRNA downstream 141489 56641542 ~ 56641789 (-) True G725346
TU824020 lncRNA downstream 144513 56638125 ~ 56638765 (-) True G725343
TU825111 lncRNA upstream 20687 56813859 ~ 56819026 (-) False LOC110530946
TU825113 lncRNA upstream 25931 56819103 ~ 56827668 (-) True LOC110530946
TU825227 lncRNA upstream 158503 56951675 ~ 56951874 (-) True G726403
TU825228 lncRNA upstream 158801 56951973 ~ 56952179 (-) True G726404
TU825254 lncRNA upstream 195949 56989121 ~ 56989770 (-) True G726430
XM_036985753.1 mRNA downstream 19976 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA downstream 19976 56669907 ~ 56763302 (-) False LOC110530945
XM_036985752.1 mRNA downstream 19977 56669907 ~ 56763301 (-) False LOC110530945
XM_036985755.1 mRNA downstream 19978 56669908 ~ 56763300 (-) True LOC110530945
XR_005052921.1 mRNA downstream 181961 56588784 ~ 56601317 (-) True LOC110530944
LOC110530946 mRNA upstream 21554 56814726 ~ 56827689 (-) False LOC110530946
XM_021613078.2 mRNA upstream 35627 56828799 ~ 56840147 (-) False penka
XM_021613079.2 mRNA upstream 78029 56871201 ~ 56881832 (-) True bpnt2
XM_036985756.1 mRNA upstream 103414 56896586 ~ 56946790 (-) False LOC110530203
XM_036985757.1 mRNA upstream 103414 56896586 ~ 56946790 (-) False LOC110530203
TU823957 other downstream 194007 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 396762 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 396762 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 550339 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 654990 56120203 ~ 56128288 (-) False G724943
TU825127 other upstream 36469 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 342969 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 493344 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1012216 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 1026875 57820047 ~ 57846689 (-) True G726900

Expression Profile