RNA id: TU825113


Basic Information

Item Value
RNA id TU825113
length 3988
lncRNA type sense_over
GC content 0.42
exon number 5
gene id LOC110530946
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56813859 ~ 56827689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAATCTAGGATATGCTCGGCTGCTCTGTTCAGGCACTTGAAGACGGGAAAAGCAACGAAGAAACCACGCAGAAGGTAGTTAGTTATATGTCAACAAGAAGTAAGTAGACAAATTCCTGTTTTAGTGAGTATCTTTTTTGCATTAATTACCATGCGCTTCACCGCGGAGTGCAAAGGTCGATTAAAGACCCGAATGTCCAGTGTTGAAAGGAGGCGATACAAAATATCCAAGGTTGAGCTGATTGTCTATTGAGGATCTCCAAGGAGCACAAACAAATTTGCCAGCATACAACAGttaaaccaaaacaaacagaactGTCTTTCCAGGGGTCAGCAAAATGAATGTCCTCTTGGAAACCTTTGTTCATTGTAATGTCCATCTATTACAACATGGAGGCATTTGTCAGATCGTTCATCTGACTTGAGAAGAAAAATGTCACTGGGGAAATCGTCCTTATCACAGGGGTAGGCATTGGCTGGCTCATGGCCGTCTGGTTCTTTGGGATGTCAACCAGGAGGGCATGAAGGAGACTGCACTAGTGAAGGAGAAAGGGGCAACTAGGGTCCACTACTACCTGTGTGACTGCAGTGACAAGGCGAAGGTCTACAGAGTGGCTGACCAGTAAACTGTCTCTCAAAGCAAACTGATGTTTGGAAAATCTATTGTGCTGGAGGCACGTTGAATGAATGGGGAAATGAGGGAGTAGCTGGTTACCAAATGTCCAGTGTTGCTGAGAATAATGCTTGATTCTGCCTGCGGAGCTTTCCAGTGGGGGTCTGCGAGAAACCGGTGGGTGGCGCATTTTATGAAGCATTAGGGAAATTCCCGTCTGACCAAAAGACGACGAGACCCACCCAGATCCTTACTGTGAGCTGTCCAGGAGGAGACGCATCAACCACAAACAAAAGAGGGACATGTCTTCTGATTTCAATTGGGTCTGCTGGATGGTTGGGATTTCTCCCTAAGGATTAGCCCTCTGACTCCCTGACCCTGTACCTCTGCAATGAGATCGCCAAGATGATCGGTGAGTAAAAGACACTTTTGAGGTAATGGCGAAGGTGACCACAGATGATATCTAGATGCATGGAAGGGATAATTTGACCAAGAACTGGGTGAACCTCAACCTTCCCAAACCGGCTGAAGCAATGACGACAATGGCGTTCAGTATGGTCTTTCACCACTTCTACCATGAGACCTGAGTCCAAGCCAGCAACCTGTACACAGCATCCAGTCAAAACTATCAACTGCCTTTGCTCTCAGGAGTGCGACATGAGTCCATGTGGAGTGAGCATTGAGAAAGATCCATCCAAACATGCTGGTGTACTGGTAGGAAAATGGACAAAGACATAATGGACTGTAAAGGACAGTGGCGGCTAAGGTGAGAGACATTATCAagggccatccactttgaacatGTGCCAATGGTAGGATGAACTGAAACACTATCTGAAGAACATGTAGAAACACCAGAAGGATGGGTGTCGAGAGGGGGGTGGTCAACAGTGCGCGTAATTCATTTAGGCTTATCCAAAATTGTCAGGTTgatttgtggaggtctgcacATTGCAACATTTATAGTAATTTAGtctaagaatgcattgagataccaATCTGTCATTACTACAATTGATGAGAGAATTTCATGCTAGAAAAATaagataaatatactgtatatatactgtacaatgtacATTCTGCTAAGTTGACGGTCTTAAATTAAAGTGACAGAACCAACATGAAGCACTAAGGACTGTCATCCTAAATTTGGGTTGGATAATTTATCAGTAGTTATAactatgatttggaaaggcttcTAGAGACAGATATGCCCCTAAAATGTGAAGAGAGCCATTAGATTGTAGCTTGGGCTACTGTTATAacgtgttctctctctttcctgtgaAAATCAATATGCATTTACCCTAAACCAAATACGGGAGATCtctagagactcagagagaactGGAAATGCAAAAATAATTGCGTAAACTGGCTCTGCAAAACAGAGAGGCTCGATTATCTTTTGGCAGGTCAAGGGGGCACTTGTGCAATCAATGGATGTTGTACTTTTGTCCCAGATCACTCTTCTAACGTGACTGATCTTGCCGAATACATTGCCACTGTTGCTGAGAATAATTCCCCACAACTGGAGTGGACTCCTGCAACTTGGTTGGAATCCCTGTTTGGAAGTTAGGGATCCCAAATTCCCAAATGGGCTGCGGCATGTGTTTTTGTCTCTTAGTTTGTATAAATTGTGTTATTTAACATGCTGTGTGCGTGTAGTTTTGATAAATTCACTCCCATTTTATAGAAGTAGCTTTTATTATGATAGTATTAACATACTAATTGGATTGTACAACCCAGAATGAAGGGCTTGAAATGAAGTGTCTGGTTTTATGTGTTGATTTCCCTTACTTCAATCGAAATATGGTATGGAAGTTAAAGAATATTTACCTTAAAATGTAATGATTTATTTTCACACAAGTGATAAAAGGGTGGAATGTGAATTTTACTTTGTACATGTTGTGGGAAAATTCTTATACAGGGACACttgaagtcaatcttaaatgagtAATCGTTTATTTTCCGCACGTTGGAGAgattccaaccaactcaatgcaccatagtacacatgtcaatcaggagctctcCCTGGGCAGACCCAGCACTTGTCTTATATacggctatacacagacaagttatatttgcatgatttagcataattaattaatcattaccgttttgtttcatttatgtgaccgaccaatactggttcataacatgtgacagaccaacaccTCATGAggcttctctctaagctgagatcTTGAAACTGAGATGTCTTTCCTTTGTTCTCAAAACACGGTCTGGACGCACTGCaaaattgcagctactgataaGAGGAAGATTTGTTCAGTCAACAACTTCAATGAACATAGAAATGGGTTTATAGAACAtcacatgaatagaacacagaaattggttataAGAAAAGCACACATTAAAATTCCCATTACATGCATCTTGTCTTTGGTGTCATAAACAATCCTTGGTTCCTACCTGTGCCTGGTAAAGATATGAGGGTGGCCGTCATGACCTCCTACTTTAGACTATTTGGCAGAACGCCCAGAATATGTTCTTTAAGATAGGAGAGGGTGCCAGGCGCATGACAGAACCAACCCAATGAACTATGCCTATGTAACGTGTCTGTAACCAGTATATAAGGGAACTAAACGGGACTGGCCCGTGGGAGCTCCTGACAGATGTTCACTATGGTGCAtcaagtttgttggaacctctccagtgaGCTTACAATaaagaatgattaatttcagATTGTCGAATTTCcacgacaccatacacaccatctgcctggtacagttgaaaccgggactcatctatgaagagcacacttttccagtgtgccagtggacatggaaggtgagcatttttccactgcagtcaggtcaagaccctggtgaggacgacaagcacgcagataagcttccctgagatggtttctaacagtttgtgcagaatactttgattgtgcaaacccacagtttcatcagctgtatgggtggctggtctcagacgatcccgcaggtaagaagccggatgtggaagtcctggcTGGTTACACTTGGTTGGATGTACAGCAAAATTTTCTAAACAAcggacaaacactttacatgttacattGGTATTTTTGTTCTCTCTAACATGACaactctatggaaaggggagatgCTTATGAACATCATTCTCCATTTTGATCTACGATcaccacaagtgtcacgggactataGAAATGACGGAATTATGGAGGTagttgtgccaacaaaaataaggggtctTTTTTTGCTATTTATAAATGATATTCAATGCGTTTTATGGGCTGTAGTAGTAAAAGACAAATTCAATATTTTTGGGGGATACCTAAAAGTTGtactaaaattctaaatcaaatagctagaTAATGAGCC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825111 lncRNA downstream 77 56813859 ~ 56819026 (-) False LOC110530946
TU825077 lncRNA downstream 36057 56782379 ~ 56783046 (-) True G726278
TU825078 lncRNA downstream 39343 56779524 ~ 56779760 (-) True G726279
TU825096 lncRNA downstream 52510 56766106 ~ 56766593 (-) True G726295
TU824023 lncRNA downstream 177314 56641542 ~ 56641789 (-) True G725346
TU825227 lncRNA upstream 124007 56951675 ~ 56951874 (-) True G726403
TU825228 lncRNA upstream 124305 56951973 ~ 56952179 (-) True G726404
TU825254 lncRNA upstream 161453 56989121 ~ 56989770 (-) True G726430
TU825253 lncRNA upstream 162296 56989964 ~ 56990336 (-) True G726429
TU825277 lncRNA upstream 194013 57021681 ~ 57022411 (-) True G726453
XM_021613077.2 mRNA downstream 25931 56783278 ~ 56793172 (-) True LOC110530198
XM_036985753.1 mRNA downstream 55801 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA downstream 55801 56669907 ~ 56763302 (-) False LOC110530945
XM_036985752.1 mRNA downstream 55802 56669907 ~ 56763301 (-) False LOC110530945
XM_021613078.2 mRNA upstream 1131 56828799 ~ 56840147 (-) False penka
XM_021613079.2 mRNA upstream 43533 56871201 ~ 56881832 (-) True bpnt2
XM_036985756.1 mRNA upstream 68918 56896586 ~ 56946790 (-) False LOC110530203
XM_036985757.1 mRNA upstream 68918 56896586 ~ 56946790 (-) False LOC110530203
XM_036985758.1 mRNA upstream 68918 56896586 ~ 56946790 (-) False LOC110530203
TU823957 other downstream 229832 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 432587 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 432587 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 586164 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 690815 56120203 ~ 56128288 (-) False G724943
TU825127 other upstream 1973 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 308473 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 458848 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 977720 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 992379 57820047 ~ 57846689 (-) True G726900

Expression Profile