RNA id: XM_036985760.1


Basic Information

Item Value
RNA id XM_036985760.1
length 2922
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110530203
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56896586 ~ 56946790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTAGGGGTGCACAGATCGACTGAGAATAAAACATACTCTCGAATCTCAAACACAATCATGTATCGTTAACAATCCATAGATATTAACACGAAATAATGTAGGAATAAGAGTTAATCACTCTTAGATGATTTATATGCAAGATAACTCGGAATATTGTCCTAgcaccccccccccttccatGGCGCAGGGATACAGACTGTACAGTCGCTTGTAGATTGCATTGAATGAGCTTGTTTGGCGTTTCTCTTGAAGCTTTGAGGACATCCCCACACATTCCGTCTAACGGAAAGATACCGCAGCATCTTTTGTTTTCCTCCGCTGGGTATCAAGATCTGCTGCCTCCAGTTGTGGGCGAACAAAGGAGTAGGAGCAGGGCAGCAGTAGGGGCTGATTGATGCTCTGTGGGGATGAGACCTGGCTGTTGAAGGCCAGTGGAGACGGCCCCCATTCTCCGCTCGCCTGGCTTCATGTGCGTGCCTGCAGGCTGCCCTACGCGCAGCAGCAGAGCCACCCCCCGCGTCAGCCACCACGGCGGCCACCCCGAGCCACCCAGACATGCCCACCGAGACCCTGACGCCGCTGGCAGATAGCAAGCCCCCCGGCCACGGGGCGGCCTTTGCCTCCACCGTCCCCCTGCGCATACTCAACAAAGGGCCCGACTACTTCCGGCGCCAGGTGGAGCCCAACCCTAAGCGGCTGAGCGCTGTGGAGCGGCTGGAGGCGGACAAGTCGAAGTACGTCAAGAGCCAGGAGGTCATCAACGCCAAGCAGGAGCCTGTTAAGCCCCCACTGCTGGCCAGGCCGCCTGTCTGTCCTGCCGTGGCTAAGAGAGGGGCGAATGGGggcggtggtggtggggtggaccTCAAGGCATCCAACAACAACTCCAAGTCAGACACATGCACCACCACCAGCAAACGGGAGAACCTCAACCTGGAGATCCTTAAGAACCTCCTGAACAGCTCCGGCTCGACCTCTGAGGGCCACACTAAGAGCGCTACTCTAAAGCCCGGGGCCAGGAGCTGGGCCCCCCACCGCTCCATCCCCACCACAACGGACTGCTCTGAGCCCACCAGCCTCCGTTCCTTCTCCGAGTCCCTTAAGGTGCCTCCCCCTGTACCTGGCCGACGGAGCCCACATGGGGGCAACGCCCAGGGGAGCAACTTGAACCTCAGCCGCCGCCTGTTGGAGGAGCGGGGTGAGGGCGATCGTTCACCCCTCCACGCCTCCCACAGCTCCTCCGACATCCGCAGGCTATGCAACGGTAAGCCACTAAGGGCGGCCCGAAGTAGCAGCAGCTCCGCACCTCCCTTACCCCCCAAACCCAGCCCCAAAGTCCTTGCCCCTCTCTGCGACAACGCCCCCCAAGCCTCTGAGAGGGAAGCCAACCCCACGCTGCCCTCCTCTGCCGCTCCAGCTGAGCAGTTGGAGCTAGAGCTGGGGAGCTCTGTGGCCCGCCGGCCATCCCTGCATCGCTCCAAGTCGGACCTGAGCGACCGTTACGCACGAGCCGGCGCCGACGTGGAGCGCTTCTTTAACTACTGTGGGCTGGACCCCGAGGAGCTGGAGAGTGTGGGCGTAGAGAGCTTCGCCCGTGCCAACTCCGACATCATCTCACTCAACTTCCGCAGCGCCAGCATGATCAGCTCGGACTGCGACCAATCACGGCACAGCAACGAGGACATGACGGACGAGGAGGAAGATGCGAGCGAACGCGTGCCTTACGGGATCTCGGCCGTAGAACGCAACGCCCGCGTCATCAAATGGCTGTACAGCATCAAACAGGCACGCGAGTCGCAGAAAGTATCTCATGTCTAAAACTGAGGGAAGAAACaaactaaaaaatatatatactaccGATGCAATGAAGGTCTTTGGACACTTGCGCACTGAATCTCTATGAATGTCAATGTATTGATCTGGCAAGGCACCCGTGGATGGCTCTTGCGGTCGCTTTCGCGTTCAGTGTTTGTTGTCCTCTGAATCTGCATGACTCCTTTCACCCAACCCGCCAATGCGGCCTCCAGCTAAAGCAGCAGGTTTAGGAAAAAATAGCCTTTTTCAAGATGGCTGCCGTTCAGTGCCGTCTCTTCGAGCAGCGCAGCTCTCTCATCGTTTTGCTTTCTCTGTTTAGACCAGCATTATGATGCCAGCTCTTTTTAGGTGTGTCTTCTTAATGTCCTTACGTTCTGAACAACACTAAGCCTGGAAGCCATACGGGTGTGAATGCAGCGCTTCAGTGTGTAACCAGTCTTTAGTCTGATAATTCTCTCTGATGCATCTGAGCTTTGTGTGTGGAAAAAAACTCCCCTGAAAAAAGGACTGTGGAAGCATGGTACAGTCCAAACCTGCCTCACCCCTTTGGTACCAGGAGAGTTTGTTTGGTACATTCCAGACCCAGACCCTGCCCCCTTCCTGGGGAAACCCCAGCTTAACCCCTCTCTCAGCATTACTATGGTGATAACATTCAGGCAGCATCATGAAACCATTCAGCATTACGTGGTTTTTGCATCTGTTTAGTTTGTTGTCCATAATGTTCTTATTGACAGTTGGATTTTGTGGTACTGGCTTTTCTTTAAGATCTGTGTAAATGCTGTAAGAAAATGtacatacaatttttttttaattgattttTGTCAAGAGGGCGCCTGTCAAGCTAACTTACTACATTGTTCAGTCTTCTCTCTGGGCTTGACTGTGAGACTGCGTCAAACCCTGTTCATCATCAAATGTGTATGACGTTGTTATGATGACATACATGGTTCAGTATATGGGGGTTGGAACTGTTACAGTACTTCAAAATTTAAGGCAATTAATTGTTTTCAATGTTATTTTGCATTATTTTAATAAATGTCTTGTTTTGCCATCTACGTTGAAAAATGTGAGTATTATTTCATTAAAATTATATTTGATGAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825113 lncRNA downstream 68918 56819103 ~ 56827668 (-) True LOC110530946
TU825111 lncRNA downstream 77560 56813859 ~ 56819026 (-) False LOC110530946
TU825077 lncRNA downstream 113540 56782379 ~ 56783046 (-) True G726278
TU825078 lncRNA downstream 116826 56779524 ~ 56779760 (-) True G726279
TU825096 lncRNA downstream 129993 56766106 ~ 56766593 (-) True G726295
TU825227 lncRNA upstream 4885 56951675 ~ 56951874 (-) True G726403
TU825228 lncRNA upstream 5183 56951973 ~ 56952179 (-) True G726404
TU825254 lncRNA upstream 42331 56989121 ~ 56989770 (-) True G726430
TU825253 lncRNA upstream 43174 56989964 ~ 56990336 (-) True G726429
TU825277 lncRNA upstream 74891 57021681 ~ 57022411 (-) True G726453
XM_021613079.2 mRNA downstream 14754 56871201 ~ 56881832 (-) True bpnt2
XM_021613078.2 mRNA downstream 56439 56828799 ~ 56840147 (-) False penka
LOC110530946 mRNA downstream 68897 56814726 ~ 56827689 (-) False LOC110530946
XM_021613077.2 mRNA downstream 103414 56783278 ~ 56793172 (-) True LOC110530198
XM_036985755.1 mRNA downstream 133286 56669908 ~ 56763300 (-) True LOC110530945
XM_021613082.2 mRNA upstream 61349 57008139 ~ 57031674 (-) True LOC110530205
XR_002474497.2 mRNA upstream 194189 57140979 ~ 57146180 (-) False LOC110530209
XM_021613092.2 mRNA upstream 229081 57175871 ~ 57180428 (-) False LOC110530210
XM_021613093.2 mRNA upstream 229082 57175872 ~ 57180428 (-) True LOC110530210
XM_036985766.1 mRNA upstream 277268 57224058 ~ 57305564 (-) False chd7
TU825127 other downstream 56460 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 307315 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 510070 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 510070 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 663647 56219516 ~ 56232939 (-) True G725007
TU825323 other upstream 189351 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 339726 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 858598 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 873257 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 915948 57862738 ~ 57863877 (-) True LOC110530228

Expression Profile