RNA id: TU825321


Basic Information

Item Value
RNA id TU825321
length 3326
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110530209
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57139075 ~ 57146180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACCATGGTGTTGTCCCAAACCTTTATTGCAGCCCTCGAACAGAACATTTacagcacgtgtcaaactcattccacggagggctgagtgtctgcggATTTTCGCTCCTCCCTGGGTGTCTAGGTCCtcattgaaagaaaaaaaaaaaaaaaacccgcagacactaggTCCTGCATGGAATGAGTTCGACACCCCTGATTTATAGAAACTGTGACAGCCGTCCAACTCTGCATACAGAATGCATTTTCACAATAATTTAAAAACCTGTTAGCCTATACAGCTGGATACTATGTTTACCTCTATGTATAACATGTTTTTGTGTGTAAACCCCTGTTCATATGTGAACtgcaataaaaaataaacactgaGATTGTAGTGATGTTTTCGGTTACTGCTggttgtggaatgtctttccctTGGAGTACAGTCCATTCTGAGCAGAAGAGCCTCAACTGTCACATATGGCTTTGAAAAAAGTGAagcactttttatttatttaaattttcaTAATTAAAAAGGTCTGATCCTaaaaaagtgtatttttatttaaaaatctAGAACAGATCTATCTTGTAAAGTTTTgtataatgtaaaattaacaccACGTTAAAAATTCACATTGACTTCAAAAGTGTTAGGTAATAGAAAAAGACCCACTAGTGTTATAGAAAAAAGACAATAAGTCCTAAGAACTAGATTGCAACCACTTGTTTTCGTGTACATCGAAACAAACCGTTATTTGGTTTCCTCAGAGAAGATTTGCATTGCAGCATTCCCTACAGTCCATCACCTTATCACCATTATCTCATCCAGCAGGCCCCTTATTACCACAATGTACAGAAAACTTCTACAATGgaaaaatgtcaaacaaaaacacactcaTCTGAATTCACAGAAACATTACATCGTTGGAGGAACACAAACTAAGCACACGACTGAGTTTCCTTGAAAAAAATGAAATCATTTTTTTTCCCTTCACCGTACAGCCTTAAGTTCAAAGCATGAGCTAGCATCATCCTTGTAGTAAAAACAAACCATGACAACATCATTAACGACAACATCAAAATTAAATACTAGCACAAGTCGAGTTAGATGTCGCTAGGACAGAGTGAGCAGGTTACACTCAAGTTCCCTTCTAGATGCACAACAGTGTTTCTCTTTGAACAGTTGGTTTGGGGGGGTCACGCACTGAAACACATGCAGAGGGACAAAAAGAGGTGGTCCGGGTGTCTGCTAAATCAGCAACAATTACAGACATTCAAAAACCTTTGTTCCAAATGAAGCACTTACCCTGGGCTTGAGCCAGTTAATATACAAGTGAAAGTGGAACTGTACATTTAGAGAGAAAGGGAACAAACGTTTATGAACATTACTGCCGCAgactttaaatatatatatatatatatatatttttttacagtttaCGTGTACTGACTGATGAATTTCGAATAATCATGTTCCTGTTGGACCACGTGTGTGCGTGTGGAGAGCAGATCTATTGGAGGACCTGGGACACTGCACAGCAGCCTGTTTTATCAGGAGACTGGGTTGGGTCAGACCATTAACCCATAACAGCTACGCCCACACTGAGCTGCACCTAAGAGTTACTACCAGACTCTGAGACATGCCCTTCCTTCGTCTCCAGGTAAAAATCAGTTTTTCCCAGAACAAATGGCATATGCCAACATTTCTCCCATTTGGAGAGTTTACATCCAACCCAAATACAgtaaaaattttttttaaaaaagaccacaaaataaataaaatagtaaaaaaatggACACAAGCCTGGCTTGGGGATAACTCATTGTGTTCCGTTAGATGTTCACCGTTCTGGCTGGAGGTATGAGTAAGTCAAAAACACTTTCAGTATTAAAGAAGTAACAGTGAGAGCAAGGTACTAGGAGTTTGAACAAACAAAACTGAAATTGAAATGAGTCTCAAACGCATCTTAATTAATGAGAACTACGGCTCATAGGATTGTTTTATAGACATACAGTCTATAAAATGCACACACgcaaacatacactatatatacaaaagtatgtggacaccccttcaaattagtggattcagctatttcagccactgcCGTTGCTGGCAGGTTAATAAAAATtgagcacaaagccatgcaatctccataaacaaacattggaagtagaatggtcttactgaacaGCTCAATGACTttaaacgtggcaccatcataggatgccacctttccaacaaggaggaggaataatggtctggggctgtttttattggttcgggctaggctccttagttccagtgaagggaaatcataatggtacagcatacaatgaaattCTAGCAGATTCTGTGCTTTAACTTTGTGacagcagtttggggaaggccctttcctgtttcagtatgacaatgcccccatgcacaaagcaaggtccatttagaaatggtttgtcgagatcagtgtggaacaacttgactggcctgtacagagccctgacctcaaccccatcgaaaacctttgggatgaattggaacaccgactgcgaggcaggcctaatcgcccaacatcagtgctcaacctcacaaatgttcttgtggctgaatggaagaatgtccccgcagcaatgttccaacatctagtagaaaagccttcccagaagagtgaagtggcggctgttatagcagcaaaggggagaccaactccatattaatgcccatgattttggaatgatatgttcgacaagcaggtgttcacatacttttggtcatgtagtgtacatctaTACACATTCTCAGTCATACACATATGGAAGCTCACACACTCACCCTACATCACCAGACTTGTCTGTTCACCTGTCAGCATAACTTTGCCCTAGATATGCAACATCTTGACATGTAGACTCAATACATACTGGTAATACAAAACTGCAGCTTTGCATCTTCACATTTAACAAAAAACTGAACTCGGCTCAGACGTGAAGTTCTTTGACTAGCAACATGTACCTCTGCTTGCTATACACAGGAAATGGAAAACAAACTACATTCCATTAGCGAAAAGCTACCCTCCCATTAACTACCTACATCTGTAAGAGAAATTAATTGATACTTGTCATTAtaagaaaaaaaaaggaaaaaaaatatatagggtAAATGAAAAAAATCTAACAAGTTCTGGAAGTGAGAAAAACAAGTTTCTGGGTGTGCGAGTGAGAAATAGGACAAATAGGAGAGAGTGTTGAAGGCCGTGATGGCGCTTTTCATTCTCTGGAGGTGGGAAAGCACGACTGCATGCGCTCAGTGGGATGCGATGTGGGCTGGTCCTCAATCAGTCTTACCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825353 lncRNA downstream 8557 57125014 ~ 57130518 (-) True G726521
TU825277 lncRNA downstream 116664 57021681 ~ 57022411 (-) True G726453
TU825253 lncRNA downstream 148739 56989964 ~ 56990336 (-) True G726429
TU825254 lncRNA downstream 149305 56989121 ~ 56989770 (-) True G726430
TU825228 lncRNA downstream 186896 56951973 ~ 56952179 (-) True G726404
TU825324 lncRNA upstream 419 57143130 ~ 57145005 (-) True LOC110530209
TU825438 lncRNA upstream 151913 57294624 ~ 57361794 (-) False G726598
TU825437 lncRNA upstream 212809 57355520 ~ 57361794 (-) False G726598
TU825439 lncRNA upstream 215612 57358323 ~ 57361794 (-) True G726598
TU825466 lncRNA upstream 223403 57366114 ~ 57366350 (-) True G726625
XM_021613082.2 mRNA downstream 107401 57008139 ~ 57031674 (-) True LOC110530205
XM_036985759.1 mRNA downstream 192285 56896586 ~ 56946790 (-) False LOC110530203
XM_021613092.2 mRNA upstream 33160 57175871 ~ 57180428 (-) False LOC110530210
XM_021613093.2 mRNA upstream 33161 57175872 ~ 57180428 (-) True LOC110530210
XM_036985766.1 mRNA upstream 81347 57224058 ~ 57305564 (-) False chd7
XM_036985768.1 mRNA upstream 81347 57224058 ~ 57305564 (-) False chd7
XM_036985767.1 mRNA upstream 81347 57224058 ~ 57305576 (-) False chd7
TU825323 other downstream 1962 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 298949 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 549804 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 752559 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 752559 56383129 ~ 56386516 (-) True LOC110530186
TU825404 other upstream 143805 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 662677 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 677336 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 720027 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4902324 62045035 ~ 62048119 (-) False G731764

Expression Profile