RNA id: XM_021613096.2


Basic Information

Item Value
RNA id XM_021613096.2
length 2600
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110530212
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57307415 ~ 57325324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCCGGTGGCAAAAtaatctttttttctttttttttcttgcgTGCGTGGCGAGGGCGGAACATATGACGTCGTCAGCAGAAGCTTGGAAGTGTTTATTGTTCCTTCCCtttgaagagagaaagaaggctAGCAAGGCAAAGCAATAACGATTACCGAGACGGTTACATAGACAATTTTCATAGTTTCAAGTAGCGAAGCCACAGTAAACGGCCGAGGCAGGTTGACACAGGACCCAGTGGCCATGGCATATGCGTACCTCTTCAAATACATCATTATCGGAGACACGGGTGTTGGGAAATCATGCCTATTATTACAGTTCACAGACAAGCGGTTTCAGCCGGTGCATGACCTCACTATCGGTGTGGAGTTTGGGGCGCGGATGATCACTATAGACGGTAAACAGATCAAGCTGCAGATCTGGGACACGGCCGGCCAAGAATCCTTCCGCTCAATCACTCGGTCCTACTACAGAGGGGCAGCCGGCGCCCTGCTAGTGTACGACATCACAAGAAGGGACACCTTCAACCACTTAACAACCTGGTTAGAGGATGCTCGCCAACATTCCAACTCCAACATGGTCATCATGCTCATTGGGAACAAGAGTGACCTGGAGTCCAGGAGAGAGGtgaagaaggaggagggagaggcctTCGCCAGAGAGCACGGCCTCATCTTCATGGAGACCTCCGCCAAGACTGCATCCAACGTAGAAGAGGCATTCATCAACACAGCGAAGGAGATATACGAGAAGATTCAGGAGGGTGTCTTCGACATCAACAATGAGGCTAACGGTATTAAGATTGGGCCCCAGCACGCTACCACCAACTCCACTCTCTCCGGTAGCCAGGGGGGTCAACAGGCCGGAGGGGGATGCTGCTGAACACCCCTCGCCCCTCTGTCCCATACCACCCCACCTTGCCCCGCCCCTTGTGTTTCTACTGGACTGGTCGGGCTCACTAACATTTTCTTAACCCCTCCCCACAGCCTTGCCAATGGAGAGTCTAATCGTGTACTAGGTGTCTGTCAGTCAAAAATACCAAGCAAAACACATTAAAGTACCCTGGTCCTGGTGCAAAACATGCCCCTGTATAAGAGCATTGGAGCCTGTCTTGGTTGTAGATTGATAGGTTGTTACTGTTGTGTTAAAACAGGCAGGGTGCTTTAGGATTGGGACTCATCATATCTATCTGTACATCTGTCAGACAGTTGTGGATaatgtctctcttttttttcacTCCCAAGTAAGGATTTTTTTGTGCTCTTTTGACTTAAAAGCTTAATTGTATTTAACACTACAATGTTGGTCATCGATAGTATTTTAATCGGTTTCATGTGGGAGAAAGAAAGCTTTGGGGAAGTGGGGTGAACTCGAAGTTTGAAATAAAAGAAACAGCTGTGTCGGAAGTAGCGGCCATGTCTAAAGTGAAGTTAAAAGAAGAAAAGGAAAAAACTCTTTTTAAATCTCTATTTATCAGTCAcattctgtgtgtatatatagttacAGTTATCCTTTCTTGCTTTAGTGTATGTTGACCAAGCTAGAATTCTTTGAATTTGCTGGGAACATCTATACTGTACGAATAGAGCTTGAAACTGCAACagtattgcaaaaaaaaaaaaaaaaccctgctTTGACACCATTTTAAGATCATATTTTACTTAATTTACTTTTTGTCCTGCCACCTGCCTTgccccccccctctatctctgtgcCCTAGATCTGCTATGACTGTGTATAGAAACTTTGGCTCAATATTCTGCATCTATTTTAATGCCAACATTTTGTGTTTACCTGTGTTCAATAACCACAAATACCAGAATTTGATCACCTCTGCTCGGATTAGAGATCTCAGCTGTTTGCCTTAACGGAGAGATTGGGAAAGCAGAAGAAAATGAGAAACATAACCAGGTTGCGGCGGAATCATTCCAGTAACTTCATTTTGCTCATAGACACATTCTTCCATTAAAACACATTGCATACTCTAAATGTATACATACACAGATTTAGACAGTACATGCATGCTTAAATGCATACATGTGTCCTTACACACAAACAACCTGCGTATGTCTATACATACAAGcctgcatatatatattttttctcttcGGGAATTTGTTTTTCATGCAGTCCGCTGTGGAGCGTCGGTGCAGAGCAGCGTTTtcctgtaggtgtgtgtgagtggctgTGTACAGCCTTGCTTTCTTTGACTGTGCGTTCTATTAGTAGATATTATGGTGAACATCTCGTCTGTCGTCAGAGGGGCACGGGAAAAGCCAAACCTGGAGTATCTGTGACCCCCTCTACATTTATTTGCTGTGTTGGTTCTTCTTAAAAATGAAAAAATGCTATCACAATAAACTATAATAAAACATTCTAAGCTTAAATATCATTTGATTGtcatgtgggggaaaaaaaattgCTAtgtttaaaatgtacattttgtaaTTTCCTTTTTAGAATTGATATTTTGCCTCTGATCCCCTAtagttattttctgtgtctgtgttggtaTATGAATGAAACAATTATATATGGATCCATACTGTATTGTAGCTTTGATTTCTCAATATATATAAAGTGAAACACAAAGAATGCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07877 RAB2A; Ras-related protein Rab-2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825324 lncRNA downstream 162410 57143130 ~ 57145005 (-) True LOC110530209
TU825321 lncRNA downstream 164704 57139075 ~ 57142711 (-) False LOC110530209
TU825322 lncRNA downstream 164704 57139075 ~ 57142711 (-) False LOC110530209
TU825353 lncRNA downstream 176897 57125014 ~ 57130518 (-) True G726521
TU825277 lncRNA downstream 285004 57021681 ~ 57022411 (-) True G726453
TU825437 lncRNA upstream 30196 57355520 ~ 57361794 (-) False G726598
TU825439 lncRNA upstream 32999 57358323 ~ 57361794 (-) True G726598
TU825466 lncRNA upstream 40790 57366114 ~ 57366350 (-) True G726625
TU825480 lncRNA upstream 69953 57395277 ~ 57395557 (-) True G726639
TU825485 lncRNA upstream 82628 57407952 ~ 57408222 (-) True G726644
XM_036985767.1 mRNA downstream 1839 57224058 ~ 57305576 (-) False chd7
XM_036985766.1 mRNA downstream 1851 57224058 ~ 57305564 (-) False chd7
XM_036985768.1 mRNA downstream 1851 57224058 ~ 57305564 (-) False chd7
XM_021613092.2 mRNA downstream 126987 57175871 ~ 57180428 (-) False LOC110530210
XM_021613093.2 mRNA downstream 126987 57175872 ~ 57180428 (-) True LOC110530210
XM_021613099.2 mRNA upstream 159917 57485241 ~ 57511592 (-) False LOC110530214
XM_021613100.2 mRNA upstream 159917 57485241 ~ 57511592 (-) False LOC110530214
XM_021613101.2 mRNA upstream 159917 57485241 ~ 57511592 (-) False LOC110530214
XM_021613102.2 mRNA upstream 159917 57485241 ~ 57511592 (-) True LOC110530214
XM_021613103.2 mRNA upstream 189865 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
TU825404 other downstream 1889 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 170302 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 467289 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 718144 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 920899 56374653 ~ 56386516 (-) False LOC110530186
TU825750 other upstream 480064 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 494723 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 537414 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4719711 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4855363 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile