RNA id: XM_021613102.2


Basic Information

Item Value
RNA id XM_021613102.2
length 6613
RNA type mRNA
GC content 0.52
exon number 41
gene id LOC110530214
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57485241 ~ 57511592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGTGCTGACGTGGAACCAATAAATACTAACTGCCAGTCTCGACGGAATTTTTTAAATGATTGCACAGGAATGAAAGCGTCAAACGAAAAGAAAAACAAAGGCCATATTTGTTAgaagtttttttaaatttttataaaGCGTGTTTTATTAATAGTTGTTAAAATACTAGCTAATCAGTCACAGAGTAGGCCTGTGTTACTATTTTCTGTTTGAGAGCTGGCATTTTGGTTATTTCGTTATTGATTCCACCCGGACTGTTTTACTGGCTGTACAGTTCCATTCTACCGAACGGAATCCCCAGTAGCAGAAGCAACTTCTCATGTTACTTTACGCATCTCTTATACCCTTGCATTTGTATTAATTTAACCCCAAATTAAGAGTTTGTGGTCAAGATGGGAGTGCCGAAATTCTACCGATGGATTTCTGAAAGATACCCTTGCCTGAGTGAAGTTGTCAAGGAACATCAGATCCCAGAGTTTGACAACCTCTACCTGGATATGAATGGCATCATCCACCAGTGCTCCCACCCCAACGATGAGGACGTCCACTTCCGTATCTCGGAGGAGAAGATCTTTGCGGACATCTTCCACTACCTGGAGGTGCTGTTCAGGATCATCAAGCCCAGGAAGGTGTTCTTCATGGCCGTGGACGGAGTGGCTCCCCGGGCCAAGATGAACCAGCAGAGAGGCAGGAGATTCAGGTCGGCCAAAGAAGCAGAGGACAAGATAAAGAAAGCCCTTGAGAAAGGAGAGGTCCTACCCTCTGAGGCCCGCTTTGACTCCAACTGCATCACACCTGGGACGGACTTCATGGCCAGGCTACAGGAGCAGCTCAAGTATTTTGTCAACAGCAAACTATCCACAGATAATGCCTGGAAAGGAGTTAACGTCTACCTTTCCGGACATGAGACTCCAGGAGAAGGAGAACACAAGATCATGGAGTTTATCCGCAGGGAAAACTCAGAGCCAGGCCACGACCCAAACACACGCCACTGTCTCTATGGCCTGGATGCTGACCTGATGATGTTAGGTCTGACCAGCCACGAGCCACACTTCTCCCTACTCAGAGAAGAGGTCCGCTTTGGAGGGAAGAAAAACCAGAAGAGAATAACAGCTCCAGAGGAGACAACCTTCCATCTACTGCACCTGTCACTATTTAGGGAGTACATAGACTACGAGTTCTCTGAAGTTAAGAACAAGATCTCGTTTGAGTACGACCTGGAGCGAATCATCGACGACTGGATCCTAATGGGCTTCCTGGTGGGGAATGACttcatccctcaccttcctcatcttCACATCAACCAAGACGCCCTGCCTCTCCTCTACCGCACCTACATCAGTGTGCTGCCAACGCTGGGAGGGTACTTGAATGAGAATGGCCACCTGAACCTGGGCAACTTTGAGAAGTACCTGGAGAAACTGTCCGAGTTTGACAGGGAGCACTTCAACGAGGTGTTTGTGGATCTCAAGTGGTTTGagagtaaggttggcaacaagtACCTGAACGAGGCCGCGGGACTGGCAGCAGAGGAGGCTCACAGCAAGGACGCCAGGAGGAAAGACCCGgactcTCTGCGTCTAACTACTCTGGATGGCGGGAAGGACCGAGCCCCTGGTCGAGGTTTTGAGGAGGATGGTGAAGAAGAGGACATGTTTGAGGCAGAGTTCAGACAGTACAAACGCACCTACTACATGACCAAGATGGGAGTGGAGGTGGTCTCAGATGAGTTTCTAGCAAATCAGGCGTTGTGCTATGTGGAGGGAATCCAGTGGATCCTGCATTACTATTACCATGGAGTCCAGTCCTGGAGCTGGTATTACCCTCACCACTACGCCCCGTTTCTGTCAGATGTGAGGAACATAGCCCATCTGAAGTTGACCTTTGACATGGGCAAGCCTTTCATGCCCTTCCAGCAACTACTGGGAGTCCTGCCCGCTGCCAGCAAAGACCTGCTTCCCCAGAGCTACAGGCACCTGATGACATCAGAGAATTCTAGCATCATTGAGTATTACCCTCTGGACTTCAAGACGGACCTCAATGGGAAACAGCAGGAGTGGGAGGCTGTGGTGCTCATCCCCTTCATCGACGAGGGATGTTTGCTCGCTGCGATGGAGCCTTATAACGATCACATGACCAAGGCTGAGAAGGCCCGTAACCGCCACACCGAGTGTGCTGTGTACAGCTACCACGCTGAGCTAGACTACCCTTACACCTCCACCCTGCCTGAACTGTTCCCCAACATCATGCATTGCCATGTCAGGGTGACATCGGTTCCCATGGACGCGTGGCACGTGTCGTTGAGCCACGTGGGGCGCAGCGACAACAGCAGCCAGCTCTACTTCCTTGGCTTCCCCACCCTGCAGCACATCAGACACAAGTTCTATAAGAAGAAGCACGGAGTGGTGGTGTTCCAGCAGAGCAGCCGAGGAGAGAACATGATGCTGGAGATCATACGTAGCAAAGAGGAACCCgtgtgtGGCGATGTGGCGGCCCTGGTCCTGGGTTGCTCGCTGTTTGTCAACTGGCCCCACCTAGAGGAGGCCAGGGTGACAGCGGTGTCTGACGGGGAAAGCAAGTTCTTCCTGGAGGAGCCGGCGGGAGTGCAGAAGCTGTATGACCGGGACTCACCCCCCCCCACCAAGGTCACCTACCTCAGTGACAAGGAGCAGAAGGACTGGGTGAAGGATGTCCAGGGCATCACTGAGCAttTCAGTAAGCGTAAGGGCATCGTGGTGAATGAGACGGCGGTGGTGTTGTATGCCCAGCTGCTGACAGGCAGGAAGTATGTACCTGGGCAGAGCGGACAGGTGCACCTGGAGAAACAGTGGTCCAAGCAGATAATGCCCTTCGCCTACCAGACCATTGTCAAGgaTATCAAGGCCTTTGACTCGTCGTCGACTCGCTTCCAGACCCTGGAGGAGCTGTTTCCCCCGACGACCACAGTGTTCATGGTGGGGAACCCCTACTACGGAGCCATGGGAGAGGTGCAAGAGTCTAGTGACGTCATCAAAGAGGGACGAGTGTGGGTAGTGTTCACGGTGCCCTGTGAACCACCAATGGAAGCCTTAATACAGAACCAGCATAAATACTGTGTGAAGTACAGTCCCGGCTACGTTCTGGCCTCTCGCCTCGGCATCACCAGCTACCTCGTCTCCAGATTCTCCGGCAGCATCTTCGTCGGCAGAGGATCCAAGAAGAAtccccaTGGGGAGCAGAAGGCTAACGTGGGTCTGAACCTGAAGTTCAATAAGAAGAATGAGGAGGTGCCAGGTTACACCAAGAGAACTGAGAAGGAGTGGCTCTACTCTGACGCTGTGGAGGAGCTGATGTCTGAGTACctggatagGTTCTCCGAAGTGTTTGACCTGGTCTCCAGGAACAGTCACGACGATGTCTTCTACGAGGACGACATCTGGCCTGCGGAGTACGAGAACGGCTCGGAGAAGGTGAAGGAGATCACTTCCTGGTTGAAGACCCACCCAGTCGCCGACATCGCCCGCGCATCATGTGACCTGCAGATCCTGGACAAGGCCATCGTGGAGCGGATCgaggaggaggtggtgaaggCTAAGGTGAAGAAGAGCAGCGAGAAAGTACGTGTTACTGTGAAGCCACGTTTGCTCTTCAGGcccttaGAGCAGCAGCACGGTGTGGTCCCTGACCCGGATGCAGAGTACCACCTGTTTGACCGAGTGGTCAACGTCAGAGAGAGCTTCTCTGTCCCCCTCGGCCTCAGGGGAACCGTCATCGGTATCAAGGCAGCTGATCGTGAGGCCGAGGTGTTGTATGAGGTTGTTTTCGATGAAGAGTTTGCTGGTGGACTTACGATCAGGTGTGCGGCGGGCCGTGGCTACAGGCTGCCTCCCTGTGCCTTAATCAACCTGAGCCACGGGGGCCGTGTAGAGCAGGGCTTCCATAAACTGACCGCCGTCGTCAAGCCCCAGCCCGCCTCCTCATACCAGCACAACAAAGGACAGCTGGTCGGGCTGAACCACTCACCGCGATCACCCTTCATATCCACACAGcAGCAGAACGGCAGACAGAACATTCTCAGGGCAGACACTCAGGGCAACAAAAACTCTGCACACAAAGCCAGCCAGAAACTGAAACCAAAGGGTAAAGATGAGGAGTTCAGTAACGTGTGGCAGTCTCTGCAGAGCTCTGGAATGCCCCAGAAACCACCAGCTCACTGGCAACAAGACAATCCGGGTAAGTCTGCCTGGGGTACAGGGTCTCCCGGACAAGAAGGGCAGGTCCAAGGGCAACAAGGCAGGAACCAACCCCAGAGTCAACAACCGCAACCTCCCAAACCTGGTCCTGCAGGAAGTATCAGACTTCTCAAGAGAAACGAAGATGTAAATTCTCCGTTTCCCGCTCAGAACGCTACAAAGAAGCAGACAGAGTTCGAGGAGTTGATCGCCAACCTGAACATCTCCAAGGGCAACGAGTCAgctccaccccctccagccaaAGAGCCCACGAGCCAAACAGAGAAGCCACTTTCTCCGCAGTCGTTTGCTATGAAGGGAACTCTGGCCCTGAAGGAGATGCTGAACATTGGCGCTGCCCCGGACTCCACTAGTCCCGCCTCCTTCAACACACAGCAGCAGAACAAGAGACGACCCACCAAGAAACTGGCGGCGACGATGGGCGACTCTGTGTTACCCGCGTCCCCTGCAGCAGCAGTCCCTCCCCTGCCGCCCCCCCAGCCCTCCTCCATGGTTCCCAGTGTGGCCTCAGAGCTGACCAGAATCTGTATGGGCCTGGGTATGGCCCCGCCTGACTTCACCTTCATGCGCAGCAGacagGGTCTGCTGGTGTATCAGGTGAAGCTCTCCAGTGGTCTGGTGGTTCAAGGTCCCCAGTGTCAGTCTGAAAACGAAGCCAAAGAGAAAGCAGCTCTTTTCGCCCTGCAGCGCCttAATTCAGTGGGTTCTGGGTTCCCCCTGCCACCGCCTCTGTTCTCTGGGGTCGGACAGATAAGGGGACCGCCCATGGGACCCATCCCTAACATATTCGGTCAATCGGgtgGACTGTTGATGCCTCCTCAGGGGTATGGTCCCCTACACTGGGGCATGCCCCTCCCGCCTCACCAGGGCCAGCCCTTCTATGGGGGCACCTTCCCTGGCGCCCGGCCCCAGGCACCCTCCGTCCCCATCGGCTCACACAACCAGTTTGTCCCCCTGCAGGTCACTAAGAAGCGCGTGTCCTCGGTCAAGAAGCCCCAGGAGTTCTGCAACGCGGCTCACAAGGCGAGGAACCAAGCCCCGGGCAGCGAATTCCCATCTCACTCCCAACCCTCCCTATCCCCGACCCCCTCCACACCCCCAAAGACCACCCAGGCAGCGGGGACCCCATCCACGCCTCAAACGCCACGCCAGAACCCCTCGGGCCAAGGCCACACCCCCGGCTCCGCCTCCAAGAGGAAACACAGGAAACTGGCGGTGAACTTCGAGGCAGCCAAAGTCCAAGAATAATCCCCTCCCCTTCCTTTTAGGTGTTGGtttttgggatggtgttctaatCGGTTGGGTCtcaatagcaccctattccctgtggtgcactacttttaaccagagccctatgtagttgTCCTACataggaatagggtgtcataagtGTGTCATTTGAGATGCAGACCTTGTTCTAGATAATGGGAGGCAATAAGGTCTGATAAATCAGAATGCCGTCGTTTTTATGTTGCGTTTGCATCATGTTTGAGATGGATTTCTATTCTCACTAATCTCGCCAGACCTTGTGGTACATGGTGTCCTTCTAGTTGGTCGGTTTATGATTGGAGCCAGTAATCAAGGGCTTAATCCCTTTTAATCTTTCCCTTTGTTTGTTTCAAGTCTCTATTTTACCAAATGTATTTTATTCTGATCAAAGTATTTTGTCACAATTCTGTGTTTTAATGTCAATCGTTTGTAATTGCTAATACTAAATCAACCTACAAaatagtcatgtgaaatcaactTCACACGCGTTAACCAGCAATTAGGTCTCAAATACAGTATACTGACGGACAGCATACAAACACATCACTATGACAAAATTCTGGAATTTCTACTCCGCAGTATAACAACACATTTCTTCCAGTAGAAAATCATTTTGAAATTGAATTCAAATCATCTCCTTTGGGACATCACCAGGACCTCTGTTAGCTGGTTGATCCAAGCCTTAATAGAGGGAGGTTTCTGTTTTTTTCTAAATAAATTTTTGTCCACCATATTTCAATCTATGGATTTTATGCATTATTCATTAACCCACATGTACAGTCTCGAGTTTTACAAGCATATTTTTGGGTCTCGCTTTGTTTTTGCATTTGTACCTTTTGCCTCTTTCAACACGTGGTTTGAGCTACTGGGTTCTTGCTCTGTGGGTATTTTAAACGTCTGAACCAAAGCACACCTGTTGAATGTCCTATTGTTTTTTTTCTAAATTAATTTGAGAGTTTTAACAAGAAAAACCTCTACGCCCCccgtcccccccaaaaaaactttcAAAAACCACAAAACTAAGGAAATGTAGCTTGCTCTTTTGATGCAGGAAAGGTGCTGTACGTATCCAATGAATAAAGACATCTTTTGTTACCATGACATCGATA

Function

GO: NA

KEGG:

id description
K12618 XRN1, SEP1, KEM1; 5'-3' exoribonuclease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825544 lncRNA downstream 27381 57457554 ~ 57457860 (-) True G726692
TU825494 lncRNA downstream 65410 57419559 ~ 57419831 (-) True G726653
TU825485 lncRNA downstream 77019 57407952 ~ 57408222 (-) True G726644
TU825480 lncRNA downstream 89684 57395277 ~ 57395557 (-) True G726639
TU825466 lncRNA downstream 118891 57366114 ~ 57366350 (-) True G726625
TU825584 lncRNA upstream 13614 57525206 ~ 57528782 (-) True G726728
TU825587 lncRNA upstream 14652 57526244 ~ 57529878 (-) True G726730
TU825589 lncRNA upstream 15010 57526602 ~ 57530260 (-) True G726731
TU825590 lncRNA upstream 15655 57527247 ~ 57531096 (-) True G726732
TU825596 lncRNA upstream 23420 57535012 ~ 57535456 (-) True G726738
XM_021613096.2 mRNA downstream 159917 57307415 ~ 57325324 (-) True LOC110530212
XM_036985767.1 mRNA downstream 179665 57224058 ~ 57305576 (-) False chd7
XM_036985766.1 mRNA downstream 179677 57224058 ~ 57305564 (-) False chd7
XM_036985768.1 mRNA downstream 179677 57224058 ~ 57305564 (-) False chd7
XM_021613093.2 mRNA downstream 304813 57175872 ~ 57180428 (-) True LOC110530210
XM_021613103.2 mRNA upstream 3597 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_036985786.1 mRNA upstream 130186 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 130186 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 130186 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 130186 57641778 ~ 57720679 (-) False LOC110530221
TU825404 other downstream 179715 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 348128 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 645115 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 895970 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1098725 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 293796 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 308455 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 351146 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4533443 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4669095 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile