RNA id: XM_036985784.1


Basic Information

Item Value
RNA id XM_036985784.1
length 5713
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110530221
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57641778 ~ 57720685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTCCATGCCTTTATCTATCTGCAGACACCTCGAACGGCGCTCGTTAATTAAGACGAATGCGCCACCAGCTCCCGATAATGGCAACCACGTCTGGACTTTCTTCACAAGGAGATAAGGGGGACACGTGGCACTGACAGAACCCGCATTGCATCACGAACACCCGGTAGCCTACCCCGCTGCCGATACAGCTCGAGCTTATTTATATAATACATTATTTATATAATACATCATTTGGCAAAAAATGACGttcacagtcacacactcacaTTTGACGGGGTAGCTCTGCTGTCGCTCCGGGGCCAGCTGCTGTCTGAATGCATGCGCATCGACGCGGATGAACGCAGCAGTGTTCAGAAGTTTGAGGTGCTGTGTGCGCACAACCAATCAAGGTACCAGCAACAGGCCACCAGTTTTCACGTTTACCCGAGGTGCAGAAGAGTGAATGAGACAGGAGATTGGAGTGGAGCGCCTCTGCTTGTGGATGGACCACTGATCAAGAGGGAAAGTAAGCTTGGAAGTTGGAGTTTATGCACGAAACGCGCAGAGATATTCCTCATTTTTATTCACTCTGTTACACGAAGGATGGAGGGGCGCAGCTGACGGTTAGGGATCGTAGCCTCGAAGAGGATAAACACACCGAAGGAACCGAACTGCCGGACGAGGGAAATATGTATGGGCGTTACACACAGGAGCTCGGTGTGTACGCCAAGGAGGAGGCGGCCCGCCTGCGTGATGGCGGGGGGCTGCGGAGGGTCACCAGTGTTCGCAGTCGGTCGGCAGAGCTGCTGGAGTATGAGAAAGACCCTTGCGCTAAGTGTCATGTGTGTACGTCTCGCTGTCAGAAGTTCCTGATCTCGCGTGTGGGCGAGGACTGGATCTTTCTCATCCTACTGGGTCTGGTCATGGCCCTGGTCAGCTGGGTGATGGACTATGCTATCGCCTTTTGTCagcaagctCAGAAGTGGATGTACGGGGGACTGGACAGTAACATGCTCCTGCAGTACCTGGCATGGGTCACCTACCCAGTGGTGCTCATCACTTTCTCAGCAGGGTTCACACAGATACTGTCCCCGCAGGCTGTGGgTTCGGGTATCCCAGAGATGAAGACCATTCTGAGAGGCGTAGTGCTGAAGGAATATCTCACCTTTAAAACCTTTGTGGCCAAAGTTATTGGGCTGACCTGTGCTCTGGGCAGTGGCATGCCCCTGGGAAAGGAGGGCCCGTTCGTTCATGTGGCCAGTCTCTGTGCAGCCCTCCTGAGCAAGTTCTTGGCTGCCTTGTTtggtggactctacaagGAAGAGCCCTTTGAGGGAAACAAGAATGAGCTGAGGAACACTGAGATGCTATCAGCAGCGTGTGCAGTGGGGGTAGGCTGCTGCTTCGCTGCCCCCATTGGAGgtgtgCTCTTCAGCATTGAGGTAACGTCTACGTTCTTTGCGGTGAGGAACTACTGGAGGGGCTTCTTCGCTGCCACCTTCAGCGCCTTCATCTTCAGAGTATTGGCTGTGTGGAACCAGGACGAagAGACCATCACAGCCCTCTTTAAGACACGTTTCCGCCTGGACTTCCCCTTTGACCTCCAGGAGCTGCCAGCCTTCGCCATCCTGGGgaTTGCGTGTGGTTTTGGTGGGGCTCTCTTTGTCTACCTGAACAGACTGATAGTAGAATGTATGAGGAAACAGAAGACAATCAACAAGTTCCTGCTCAGGAActcctctctccatgtcagACGTCTGGTGTATCCTGCTATGGTCACCTTGATCATCTCAACCCTCACCTTCCCCCCTGGGTTTGGACAGTTCATGGCTGGACAGCTGACGCAGCATGAGTCTCTGGTGGCGTTGTTGGACAACAGAACATGGTGTCGGCAGGGCGTTGCCGAGGAGTTTGACTACATCAGCCACTCCCACGCCTGGAAACACCCCCAGGTTAACGTCTTCATCACTCTCATCCTCTTCATCGTCATGAAGTTCTGGATGTCTGCAGTAGCTACCACCATGCCTGTCCCATGTGGGGCCTTCATGCCAGTTTTCCTCATTGGTGCGGCATTTGGACGTTTGGTAGGCGAGACCATGGCTATCATGTTCCCTGATGGCATCCATGCTGATGGTAGTGTCTATCCTATAGTGCCTGGCGGCTATGCTGTAGTGGGTGCAGCGGCGTTGTCGGGGGCAGTGACTCACACGGTGTCGACAGCAGTCATCGTGTTTGAGCTGACGGGTCAGATCAGCCACATCCTGCCGGTGATGATAGCGGTGATCCTGGCCAACGCCGTAGCCCAGTCCCTCCAGCCCTCGCTATACGACTCTATCATCAGGATCAAGAAACTACCCTATCTCCCTGAACTGGGCATGGGGCACCACGAGAAGTATAACATCCGTGTGGAGGACATCATGGTTAGAGACGTGCGTTacatcactctctcctcctcctaccgaGAGGTACAGGAGGTCCTGATGACTGGACAGCTGAAAACACTGGCCCTGGTTGAGTCCACAGacTCTATGATCCTGTTGGGTTCTATAGAGCGCTCCCAGCTCCAGTCACTCCTGTCCCTCCAGCTGGGTCCAACGCGCAGGCTCGACCACCTCCGGAGGCACGCCCAGGacaacggcacacacacacacacactgggcgcgcacacacacctgaccagccTGGACACCATGGACAGTCCCCCCAGCccaccctgcacacacacacactcctacacctCCAACTCCTCCAATACCAGCGCACGCCATGGGGTTCGCTTCCTGATCTCAACAGAGGAGTCCTCTTTCAGTGCAGCTGTGTCCAACTCTCAGCTGCCACTCAAATCTGCAATGAAAACTGTCCCTACTattcacaacacagagacaccgAACAGTATACATACTCTCTCAATTAATAGAGACACGCcgactccctctcctctgtcaggcTCTCAGCAGACCCTTTCCTGTGGTGACCCTGAGAGAGAGCTACTCGAGAGCCCGGCAGAGCCAGAGGCTCCTGAGAGCAGGGGGCCCAAACGAGTCAGGATCTCCATGGCGGCGGAGTCCCCTGAAGTAGAGGATGACATGACCACAAACGAAATAGCAGAGTGGGAGGAGCAACAGCTGGACGAGCCAGTGGATTTCAACAACTGCAAGATAGACCCCGCCCCTTTTCAGCTTGTGGAGCGGACATCTCTGCATAAGactcacACCATCTTCTCCCTGCTGGGACTGGACCATGCCTATGTGACCAGTACAGGGCGGCTGGTGGGCGTGGTCTCCCTCAGGGAGCTGCGTAAGGCCATAGAGGGTTCAGTGACGGTGACAGGGGTGAAAGTTCGCCCCCCTTTGGCCAGTTTCCGTGACAGCGGCAACACTACCAGTGTTTCCGAGGTGACAGAGCTGCACAAGCTTTGGAACCGCCACAGAGGCCTCTCGTTACCACGGGAACCCACCCCGCCCGACATGGAGGACCAATTGGACGTTATGGATGAGGAGACCCCTGTCCACTTCATACAGGACCAATCAGATATGGAGTTTGAAACCATCCCCACTGACAATATGGACCCGCCATCGGAATTGGTTCTTCAGGAAAGCCTCTCAATAACAGAGGACCAAACAGAGGAGTTTATCTTAGAGTGCAGCCCTTCCCACACTGATGAATCAGAGCTGGCCTGTGATTTTGACCCCTCCCACCTCCCTGAGACTGACCAATTGGAGCCGGCGAAGGAACATGGAACCCCACCACATGGAACCACACCCCAGAACATAGAGCAAATGGACCAATCAGAACTGCAGTGTAAGCGAAGTCCCAACCGCACTGAGGACCAATCGGAATGACAGAAGGGGCGAGGGACAGTTAGGAGTTGCTTCGTGGTTCGTTGAGGTTTCTACAACCTTAGAGGTCACGTTCACCTGGATCTGTCTGTGTCCACAATGTATTGTGTGCGCGTGTGTTGGTGTAAATGAGCTCGTATTCCTGTGTGAGTGATAGAGTAACTGAGTGAATGTGACAACATGGTTCTGTGTTTAACAAAGtgttttggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgcgtgcgcgtgtgtgtgtgtgagacttggTGGAACCTTGCCCATGCACCCATCTGGTGCTGACACTTCTATTCTCAGTTTGATTATCAGAGCCAAACTACATTTCCCCCCCTAAATATAGCTACAAAtaacacacatagagagagaaagcagatcAGAGGgataaaggaaaggagagagaggaaagagaagggagggtcTCACTTTAGATTAAGTGGCCTATAAAATCTACATATTTTCACAGCTACATTCTAAAGGACATTCTGTAATTGCAGTATAAGTGCATGTACAGTCATATCTGAAATGGGATATTAAGAGAAAGACAATAAGTTACTACCCTAAGGCAGCTGAGAAAAGGCCAACACGTTGACATTGCTCAGTCATAAAATGGCATCCCACAGGGTTAAGAGCATTTGTGAAGCACATTGTAATTAACATGAATTTAACTCAAAGTACATATAGCCTTGTCTGGCATTAAGGTAGGAGGGCGGACGGACGTTAGAGAGTTTCTTGTCTTGTAACAGGGTGTTTTGGTCACAGTGTCATTTTGTATCTTACATTTCTTGAGATAGGATGTTATGTGAATATCGTATCCTATCTACTGTACCGTGTTCCGCATGTTTCTGGAATGATGTGAGTGTTAATGACACGTTACATTGCACAGGAAAAGTTggttatgtggagagagagacaacatcagtTGTTGTGAGCACACATATGCACATAGGCCAATAGTACACGCAcaagggctcgattcaatccgtgGCGCTGAAGATCCGCGTTGCCGTGCGATTGACATTTtgaaggcaatgttcccgcattAGCGGACACTACGTTCACGGTAAGTGCTGCACATTTCAATTGTGCTGTGGATCTTCTGTAACACAAATTGAATCGAGCACTAAGTAAATGAACACCGTACACATTCATAAATCTACACATAGAAAATAATCTCCTAGaaaatacacaccacacacacattgaaaATGATTAATACAGCCTGCCTGGCCTTGAAACCAGTTTAGAAATATGTACTACCAGCTTAGAAGCACAGTTATAAGTCTCCAAGTGTACTGGTGAGCAATAGAAGCCTCTATAAAGGACTGAAACAActgttgtagagagagtgtgtgactgTTCTCCACAGTCTCATTATAAAATGAGTTCATCAAACAGATGTTATGTAATTTGTCTCTTCAATCATTTCTCTTAGCTCTGTTGACAGATTTGagccattatatatatatttcaattctATGTAAAAACCCTGCCATAACAACTACAATTTAACGGTTCATTTtcttctgtaaaaaaaaagtCAGTTGCGCAAACCATTTATTGTCGTCTTACTTTTGTATGCACATAGAATGTGAAGTAGTGCTCGCCATACAAGATATAATGTAAACTGAGTCTAATGTATAGAGTGTATAAGGTAATTAACAGCGCTAGTTAAGCAATaagactgtagtttctcccttTATATAGCCCCGGCCTGTAAATGGTTTGTACATATGAAAATACATTATGACGGAAATCTACGCATTGTACATAGGAGAATATGCATTTCAGATCAACAGCCATTGTTATTTTTCAGAAAACATACTAATTGTTTTTTTGTACATTAAATTTCAACAAAACTTTGAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825641 lncRNA downstream 13585 57627977 ~ 57628193 (-) True G726781
TU825512 lncRNA downstream 25761 57615634 ~ 57616017 (-) True G726665
TU825524 lncRNA downstream 31016 57610188 ~ 57610762 (-) True G726672
TU825637 lncRNA downstream 34187 57607355 ~ 57607591 (-) True G726777
TU825636 lncRNA downstream 34821 57606610 ~ 57606957 (-) True G726776
TU825679 lncRNA upstream 1429 57722108 ~ 57722347 (-) True G726819
TU825762 lncRNA upstream 128578 57849257 ~ 57849704 (-) True G726890
TU825793 lncRNA upstream 135474 57856153 ~ 57856353 (-) True G726915
TU825773 lncRNA upstream 137554 57858233 ~ 57859957 (-) False LOC110530228
TU825772 lncRNA upstream 137604 57858283 ~ 57859957 (-) False LOC110530228
XM_021613103.2 mRNA downstream 109484 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 130186 57485241 ~ 57511592 (-) False LOC110530214
XM_021613121.2 mRNA upstream 81159 57801838 ~ 57803851 (-) True LOC110530224
XM_021613122.2 mRNA upstream 90864 57811543 ~ 57813057 (-) True lpar5a
XM_021613124.2 mRNA upstream 137554 57858233 ~ 57864165 (-) False LOC110530228
XM_021613127.2 mRNA upstream 145485 57866164 ~ 57876385 (-) False snorc
XM_036985788.1 mRNA upstream 156118 57876797 ~ 57907215 (-) False LOC110530229
TU825404 other downstream 336252 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 504665 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 801652 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 1052507 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1255262 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 84709 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 99368 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 142059 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4324356 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4460008 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile