RNA id: XM_021613121.2


Basic Information

Item Value
RNA id XM_021613121.2
length 1459
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110530224
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57801838 ~ 57803851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGTGCGCTGAACAATCTCTTGCTCGCGCAGTCAGCCCCTCTATTCACATGTAAATGAGGCGTTATAAATACCTACTACTACTGGCACTATCGTTGCGCTTGAGGCTGCATAACAAATCTAGTACCCGTCTGCGCAAAAGTACAGCTCTGCTTTGTTTGCAGCAGGGACCGGCGGCCATCTGTCCCATTTACGGAGTGTAACGGTCGTGTGGATTTACCAAACCTCTGGCAGTGTCTGGGTTAAACATCAACAACATGGCCCCCACTCACAATATCAAAAAAGAACTGAGTAGAGACGAAGATGAATACTATGGCATTAAAGTGGACAGAAAGaTCAGAAAGCCGTTGGTTGAGAAAAAGAGACGGGCTCGCATCAATGAAAGTTTGCAGGAACTCAGAGTTCTTCTCGCAGACACAGATTTACAATCAAAGATGGAGAATGCCGAAGTTCTGGAAATGACTGTAAAACGAGTGGAGAGTATCCTTCAAAACCAAGGACAAGAGGTAGACCCAGTGAACCAGGAGGCGAGTGAAAGGTTCGCTGCTGGCTACATCCAGTGCATGCATGAGGTGCACACCTTCGTGTCCAGCTGCCCGGGAATCGACGCGACTCTCGCGGCGGAGCTCTTGAACCACCTCCTGGAATGTATGCCTCTGAACGACGAGGACAGACTCCAGGTGATGCTCCAGGATATTATGGCGGACTGCTCCACTAATGGCAGCAGCACTTGGCCCAGTTCTGAGGGCATTTACGCAGCACTGGTCTCCCCTGGAGGAAGGAGCATCCCCAGCGAAAGCTCCTCAACCCTCTCCCCAGCGCCCTCCACCACCTCCAGCGATGACCTGTGCTCGgatctggacgagactgactCTGAGCAGAGCCACATCTCTGTGGACGCTGAAAACCAGGATGTTCTGAACATGCCCAGAGTGGCCTATTCCAAGTCCATGTGGAGACCTTGGTAGAGCCAAATTACTGTAGACCTACAACTGTCAGTTACTAGAGGAATAGCCTAAAAAAGTTATTGTATATTGTgttttattctgtatatttgaAGATACAATTCCTTGTAATCTTGTTAGACTGTTGGATGACAGAAGTAGGAATAGCATGAGAAGTGGGACATTATCACTACAATGACTATACTTGGTAATGCAAAGTCTGGTTGCAAGTAGGCTAGAGGTGGCATCATTTTAAAAAGCAATTTTTGTGTCTTAGCCAGAATTCTAGGTTGTACAGATGTAAATATGTATTTGTTGATAGTATGGCTGTATAGAAAGTACCATGTCCTAGTACACCACACTCAGTAATGCCGTGTtgtgtgtaaattattttatttgtgtAGGTTTaatcaaataaatattttatgTTATCTGTAACATTGTAATAACAAATGTTTTTCAGACAAATTGTCATACACTGACGTAGTTAATTTCATTAAATTGATTTTCTCTTCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K09087 HES2_6_7; hairy and enhancer of split 2/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825679 lncRNA downstream 79491 57722108 ~ 57722347 (-) True G726819
TU825661 lncRNA downstream 123181 57677860 ~ 57678657 (-) True G726801
TU825660 lncRNA downstream 123521 57664324 ~ 57678317 (-) True G726800
TU825641 lncRNA downstream 173645 57627977 ~ 57628193 (-) True G726781
TU825512 lncRNA downstream 185821 57615634 ~ 57616017 (-) True G726665
TU825762 lncRNA upstream 45406 57849257 ~ 57849704 (-) True G726890
TU825793 lncRNA upstream 52302 57856153 ~ 57856353 (-) True G726915
TU825773 lncRNA upstream 54382 57858233 ~ 57859957 (-) False LOC110530228
TU825772 lncRNA upstream 54432 57858283 ~ 57859957 (-) False LOC110530228
TU825760 lncRNA upstream 62321 57866172 ~ 57867754 (-) True snorc
XR_005052923.1 mRNA downstream 81153 57646363 ~ 57720685 (-) True LOC110530221
XR_005052922.1 mRNA downstream 81154 57645659 ~ 57720684 (-) False LOC110530221
XR_005052924.1 mRNA downstream 81154 57645659 ~ 57720684 (-) False LOC110530221
XM_036985783.1 mRNA downstream 81159 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA downstream 81159 57641778 ~ 57720679 (-) False LOC110530221
XM_021613122.2 mRNA upstream 7692 57811543 ~ 57813057 (-) True lpar5a
XM_021613124.2 mRNA upstream 54382 57858233 ~ 57864165 (-) False LOC110530228
XM_021613127.2 mRNA upstream 62313 57866164 ~ 57876385 (-) False snorc
XM_036985788.1 mRNA upstream 72946 57876797 ~ 57907215 (-) False LOC110530229
XM_036985789.1 mRNA upstream 72946 57876797 ~ 57907215 (-) False LOC110530229
TU825404 other downstream 496312 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 664725 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 961712 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 1212567 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1415322 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 1537 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 16196 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 58887 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4241184 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4376836 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile