RNA id: XM_021613124.2


Basic Information

Item Value
RNA id XM_021613124.2
length 3391
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110530228
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57858233 ~ 57864165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTTCGTTTGAACATTTCTATAAGAAATAAGCACATTTAAAAAATCAGCGTTAATATATTTTCATATATGTGATAGCAGGATGATACTATGTTCTCAAGTGATTGTTTACATTGTTTGTTGTGGTCTGCTATCTCTTTGTCTTAAGGATGTAACAGActtcacccaatgttctgctgcaTAGAACCCCTATCCAGCTACTGTAGACAACTGAGGCTATGTCACATATAGGAAGTGGTCatgggaagaagaaaaaaacagaacTGTGAAACTACTGTGTCTGGAacggacagacagatagacagactgaTAGACAGACGCACCAGCAGAATGGCATCTATAAGCGACGCCATGGAAACCAACTGCTCCTTCGACGAGGTGGACCACCTGATGACATCACTGGAGCTCGTCATCTACGTGCCCATCTTCGTGTTTGGCCTTATCCTCAACGTCCTCGCCCTGGTTGTCTTCTGCATCTTCCTCCGCAAGTGGAGCGAGTCCACCATCTACATGACCAACCTAGCCCTCATggacctccttctcctcctcctgctccccttCAAGATGCACGCCACCAACCACCAATGGGCGGCCCACCACCGcttcctctgctccctcctggaGAGCCTTTACTTCGTGGGGATGTACGGCAGCATCTATACCATCGCCTGCATTGCTGTGGACCGCTGGGTGGCCATATGCCACCCATTCCGCGCCAAGCAGCTCCGTTCCCCCCGGGCTGCTCTGTGGACCTGCATCCTGGTCTGGGTGGTGGTGCTGGGGAGCATCTCCCCCATCTATGGGTTCCGCAAGGAGGAAACAGGATCCTTCCACTGCTTCCACACGTTCTCAAAGGAGGGCTGGCATCCAAAGGTGATCGGCTGCCTGTTGAGCTTCGGGTTCGTGGGGCCGGCCCTGGTGCTGGTGGTGTGTTCAGCCCAAAGCATCCGGACACTGAGGCAGTCGGGCCAGGAGAGCCCTAAAAGCAGAAGCTGCGTGAAGATCATCTACAGTAGTCTTTGCGCCTTCCTGGTCCCATTCACACCCAGCCACCTGGGCATCCTGCTGCAGTTCCTGGTGCATCAACGCCTGATCGAGGACTGCTTGGCCAAAACAAGGATCAGCTTGTACATTCAGGTGACCATGAGTCTGGCCAACATCACGTGCTGTCTAGACGCTCTGTGTTACTACTTCATCACCACGGAGGTGAGGAGCTCCAAGCAGACCTTCACCTTCAGGAGGTCCATGAGCCAGAAGAGAGCCACCACCAGCACCTCGGAGCTCTGACGAGACCCATGGAGGAAAAAACACTGAGCcaaactggttgaaatgacgtTTTATCCATTTTCGCCCACTGGGAAGTTACTGGCTGTAATCTGACTAGGTTTGTGAGACATTCTGCCACTGTTGGAGGACAAAGGACGTCGACACGGAAAAAGGAGTGTTTATTGTTGAATACCTAGACAACAAGGTAGGTTGAAGGACAACAAGGTATTGTAGGTTGAATAGGAGAAGTCAGTTTGCTTACAATAGGCATTCATGAGCTCTATAAGTCACACAGTACGTGGGCTAAGACATACAGTCAGGTCGAAAGTAATTGGATCCCTTGATATAGATGATCAAAAAAgataaaatcaaataaattatacaaatactgagctgtatTGTATGCTACATTTTAAAGAAAGAAAATCATATTATTTTatgctaatacaattgctcagagaaagagattttgtttaacaagtcattttttttaaatctcaaaaagaatatggatccccatttttCAATAGTCCAGCACCCACCCCTTGCAAGAATAatgacactgagcctttttctgaaatgttttatgagattggagaacacattggaagGGATCTTTGACCACTCCTCTAAACAGAACCTTTCCAGAATATTTCCTTGGTCTGCgtttatggactgccctcttcaatttaAACCACAGGTTtccaatggggttcaagtccagaaACTGAGTTGGCCATaggcaaaatgttgatttttttgGTCagttaaccatttctttgtggactTTGATGTGTTCTTGAGGTTATtatcttgctggaagatccacttgcgtcCAAGTTttagcctcctggcagaggcaaacAGGTCTTTGGCTCAAATGTCCTGGTAATTGGTAAAGTTCATGACGCCATTGACCTTCTTAACAAAGccccccaggaccagtggaatcaaagtagccccataacatcaaagatccaccaccatattttacagtcgAGATGAGGTATTTTGTGGCCATGCACTTCTATTTTCATGTCACCTGATCATAGTTTGCTAAATGCCTTTGGCACTTAGAATGGAACCGGTCATATGACATGttatattttatacagtcttttttgctcagcTTTATTAAGGGATCCAATCATTTTGGACTCCACTGCATGTGGGCTAAGACAGCACGCCACTGGTTTCAACTGCCGTCATGAAGAATAAAATTCCCATTTATCTGCGTATGCAGTATGCTGAATGTTACTGTGGAGGTATGACTAAACATATGtacatcaactatatattatgTTCTGTATTGAATATGGTGTATTATAATTGTATTACATTATTATACGATCATAGTTTTGTCCATGTCTGTAATTAGGGTAAAAGTAGTCTATTTAAAATACGTATGTAGTGTATAGGATGGATACGATTAGGATATGTGATTTAGGAGAATTGGAATGGAATTAACCCCAACCCTGCTACATTGCATGAAAATCCTGGTCATTATTGTTTTAGCTGCGTTCATTTACCCTCTTGTGTAAATTAATGAATGCTTTGTTAGACAACAGTCCAAACAGGAGTACACATTATTAAAGCTGTCTATTCATATAACAGCAACCTATTTTACTGACCGCTAAAATAAGCTTTGTTCGGTCATTAGATTCaatcttttttaaatatttttttttaagtaaacaGTGTTATTTGATCTGTTTTCTAGAAAGAGTTGTTCAAAACAGTCCTTATCAGTGCGTTACATGTACCTTTAACTGGCGTTTTGAAACTGATAGGAGGATGAACAGAAATGTAGACTGCTGTCTGGCTGAACTCTCAGGATCTTGATTTAGTCTGGCTTTGAAGGACATTCGGTTTAAACCGTGAAAAAAGAGAAACCAAATGAAACACTGTGGCAAAGACTTCCGAATAAACCCCTGATCCATTTCCCTTTGAGGCCCGACTAGGCTGGCTACATGAGCCTCTACAATGACTCACTTTCTTGTGACTTACTTTAAACAGAGTCAGAATCTCAGTaatatccatatatatatatataccctacTGTTCAagtgtttggggtcacttggaaatgtccttgtttttgtccattaaaataacatcaaattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825793 lncRNA downstream 1880 57856153 ~ 57856353 (-) True G726915
TU825762 lncRNA downstream 8529 57849257 ~ 57849704 (-) True G726890
TU825679 lncRNA downstream 135886 57722108 ~ 57722347 (-) True G726819
TU825661 lncRNA downstream 179576 57677860 ~ 57678657 (-) True G726801
TU825660 lncRNA downstream 179916 57664324 ~ 57678317 (-) True G726800
TU825760 lncRNA upstream 2007 57866172 ~ 57867754 (-) True snorc
TU825799 lncRNA upstream 5268 57869433 ~ 57870062 (-) True G726921
TU825845 lncRNA upstream 124569 57988734 ~ 58054146 (-) True G726967
TU825913 lncRNA upstream 271167 58135332 ~ 58140314 (-) False G727026
TU825915 lncRNA upstream 271167 58135332 ~ 58140314 (-) True G727026
XM_021613122.2 mRNA downstream 45176 57811543 ~ 57813057 (-) True lpar5a
XM_021613121.2 mRNA downstream 54382 57801838 ~ 57803851 (-) True LOC110530224
XR_005052923.1 mRNA downstream 137548 57646363 ~ 57720685 (-) True LOC110530221
XR_005052922.1 mRNA downstream 137549 57645659 ~ 57720684 (-) False LOC110530221
XR_005052924.1 mRNA downstream 137549 57645659 ~ 57720684 (-) False LOC110530221
XM_021613127.2 mRNA upstream 1999 57866164 ~ 57876385 (-) False snorc
XM_036985788.1 mRNA upstream 12632 57876797 ~ 57907215 (-) False LOC110530229
XM_036985789.1 mRNA upstream 12632 57876797 ~ 57907215 (-) False LOC110530229
XM_036985792.1 mRNA upstream 12632 57876797 ~ 57907215 (-) False LOC110530229
XM_036985793.1 mRNA upstream 12632 57876797 ~ 57907215 (-) False LOC110530229
TU825774 other downstream 11544 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 46811 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 552707 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 721120 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 1018107 56829641 ~ 56840126 (-) True penka
TU831141 other upstream 4180870 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4316522 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 7126136 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 7654002 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 8236931 66101096 ~ 66101627 (-) True G736841

Expression Profile