RNA id: TU825760


Basic Information

Item Value
RNA id TU825760
length 1583
lncRNA type sense_over
GC content 0.38
exon number 1
gene id snorc
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57866164 ~ 57876385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCCATCACCAGTAAAATAATATTGAAATGTTATTAATATAAAGAATTTGGGTTATACCCAGAGGATTTAGAAAATAGTATATTCTGTAAACATTTGCATGTGAAGAGCCATTGGCCAAAGCTCGCTGGAGGGGTTATTTGTGTCTGTAAATCCACACCACAACCCCTGAATTGGTAATAAACCACACCATTTGTAAAGTATATCGAGACTGTGATGATGCATTTTAAATCAAATTCGACCTTGACTTGACAATCCTGCTTTATACTCGAGTGTCAGGTTGGTGGCCTAACCTCTGACCTTTGCTCgttgtgtgttctctgtgtgccCCTGTATCCAGGTGTTCTGGGCCCAGGTGCCATCACAGCCATCGTCATCGCAGTCGTCCTGGGGGCTTCAGTCCTCCTCGCCCTCATTGTCATTACACTCAGGAAGTTCACTGCTTCCTAGAGccacttcctcctctttctttcaatctctctctttcacttcttTGTCACTTCCATTCATCTATCTTTATTGTTTTTCCCCATTCTCTAAATGTTCTCCCATTCCCTCTGTTTCCCTTATACACACATATTGTGAAAGTGAAACCCTCTACAACCCTGGATGCTATAATGGTATGTGGCAGGTCCCTTTTGGCCTTGAAGAGCAACTGACAATGAAATACCTTCAGACTCTAGCTACTATAATCATGCTGTTCTTGTTGGCCCCCATGTCCACTATCACGTTGTCAATTGGAGGCTTAAGTGGGAGTTAGGATTTGCCCCTAAGAGGACATTAGAGACTGGCAggttcttccagtgtgaagtcaTAGCTTTAATAAAATCCCTTTTACTTTACTTGTAATGATCTGTGTgctgaaatgttttgtccagCTTTGATTTGTTCTTGCTGATCTTTGTAGAAGTGATTTTTTTTTCTGACGGTTCTGTTGTGTGTTGCTGTatcctgtctgtctttgtgtatgaACGGGTGTGATGAGTGTGTCATTGTGAAGATGAATCCACCATGTTTATTACGTTGCTGAGTGCCTACTCCATTTGGTTAAAAGTGAAGTGTTATTGACAGTAGAATGAAAAATGAAATGATTTACCAAATGTACAACACAGAATTCACTTGTATGATCAAATGTTATTTTGAATGATCTTATCTCATGAGAGAATATTTTCACAATGCACACAATGTGCTACCTTTCACTGGCAAatagtatttttttaatttaagaaACGTTTGCCATTTTCCATTGGAACAAACACATTGATAGTGACCCAGAACTATAATATTTTAATATGAAAATGCTGGCGTCgtcaataaataaacataaacagggtaatttttgtatttttttgtattttttttacctgcAAAGCAAATATTAACCTTGCCTATTAAACGGCAGAATGactgttgtgtttgtgtttttgggGGGCATTGATGGGAAGCGTTGTATAATATTTAGATTTTCTCTGTTTTACTCTTGCGTTTTACCAATCAACTAACTAATGCTTATGTAAAACAAATATTCTTTAAGGTAATATCACCTGTTTGAACTATGTGTTATATTGTATAAATCACTTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825773 lncRNA downstream 6215 57858233 ~ 57859957 (-) False LOC110530228
TU825772 lncRNA downstream 6215 57858283 ~ 57859957 (-) False LOC110530228
TU825793 lncRNA downstream 9819 57856153 ~ 57856353 (-) True G726915
TU825762 lncRNA downstream 16468 57849257 ~ 57849704 (-) True G726890
TU825679 lncRNA downstream 143825 57722108 ~ 57722347 (-) True G726819
TU825799 lncRNA upstream 1679 57869433 ~ 57870062 (-) True G726921
TU825845 lncRNA upstream 120980 57988734 ~ 58054146 (-) True G726967
TU825913 lncRNA upstream 267578 58135332 ~ 58140314 (-) False G727026
TU825915 lncRNA upstream 267578 58135332 ~ 58140314 (-) True G727026
TU826278 lncRNA upstream 315597 58183351 ~ 58190704 (-) True LOC118965534
XM_021613124.2 mRNA downstream 2007 57858233 ~ 57864165 (-) False LOC110530228
XM_021613122.2 mRNA downstream 53115 57811543 ~ 57813057 (-) True lpar5a
XM_021613121.2 mRNA downstream 62321 57801838 ~ 57803851 (-) True LOC110530224
XR_005052923.1 mRNA downstream 145487 57646363 ~ 57720685 (-) True LOC110530221
XR_005052922.1 mRNA downstream 145488 57645659 ~ 57720684 (-) False LOC110530221
XM_036985788.1 mRNA upstream 9043 57876797 ~ 57907215 (-) False LOC110530229
XM_036985789.1 mRNA upstream 9043 57876797 ~ 57907215 (-) False LOC110530229
XM_036985792.1 mRNA upstream 9043 57876797 ~ 57907215 (-) False LOC110530229
XM_036985793.1 mRNA upstream 9043 57876797 ~ 57907215 (-) False LOC110530229
XM_036985794.1 mRNA upstream 9043 57876797 ~ 57907215 (-) False LOC110530229
TU825771 other downstream 2295 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 19483 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 54750 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 560646 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 729059 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 4177281 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4312933 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 7122547 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 7650413 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 8233342 66101096 ~ 66101627 (-) True G736841

Expression Profile