RNA id: XM_036985788.1


Basic Information

Item Value
RNA id XM_036985788.1
length 5185
RNA type mRNA
GC content 0.58
exon number 27
gene id LOC110530229
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57876797 ~ 57910140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTTCTAGAAAGAATGGCAGAAACTCAGACACTCAACTTCGGACCAGAATGGCTCcgggccctgtctgggggtggcCATGGGGGTGGTAGCAGCAGTAGCGTTGCCACCTCACCACCACTCTCTCCTGCATTGCCAAAGTATAAACTTGCGGACTACCGCTACGGGAGAGAAGAAATGCTAGCACTTTATGTCAAGGATAGGGAGATCCCTGTAGACCTACATGATAAGGATTTTCTGCCCATTTTACAAGAGGAGCCCCTGCCACCGCTGGCACTTGTAGCTTTTACAGAGGAAGAGCAGAGAAATTTCTCCATGTCTGTAAACAGTGCAGCGGTGCTCAGGCTGATGGGAAGAGGAGGGGGCCCGGTGGGGCCAGGGGCACCGAGGGGTCGAAGCACTTCACGGGGAAGAGGACGgggtagaggagatggagggttTTACCAAAGAAGTTTTGATGACGTGGAGGGAGGCTTTGGCCGCGGAGGCAGGGAGATGCACCGCTCCCAAAGCTGGGAGGAGAGTCACGCTGAGTCTATTTTCTCCCCATCTAGGGGAGACAGAAGGTTTGAAAAGCCAGGTCGAAAAGAGTCAGAAGTTGCTCCTGCCCACTTTCCGATGAATCATATCCGTGCTAACTACGAGGATGTTGGGACCGGCGTGGGAGGCCTGCCTGTGAGGAAGCACGATTTTACACGTTCGGAGAGCGAGAACTGGCGCACGTCCCGCGACGAAGCAAATGGTGAGGACGGTGACGAGGGGGGCTGGCGCCTGGCGGGTGCCTCGCGACGTGACAGCGACCGGTGGTGCCCCCCGAGTCCAGACGGGCTGCGGTCGGCAGTGCGGCGAGAGGTGCACCCGGGGGAGCAGCCACGGCAGCGCCGGTTCCCGTTCGACGCCAGAGAGGACGAGCGCGGCTACAGGCGTCCCCGGTCAGGCAGTGGCAGCCTGGAGGAGGATGGGAGCAGCCTGCCAGAGTGGTGCTTGGAGGACGCTGAGGAGGAGACTGGCACCTTCGATTCGTCCGGAGCCTTCCTCTCGCTCAAGAAAGCTCCCAAGGAGCCTATCTTGGAGGAGGCAGAGCTGGACTTCAGACCCCTGGAGGAGTGTGACGAGGGCCTTGAGGAGGACGGACAGCCCCGGGAGACCAAAAACCCAGACAGAGAGGCAAGAAGAGACCCCGACAGAAAACAGGATGTGGGAAGAGGGGTAGTAGAGGCGCCGCCTGCTCCCTCGCCTCCAGAACCCCAGCCCTCCGCCCCTCTGCTGCCCCCCAGCCAGCCCGACAGAGCAGAGGAGCCTGAGAGGCCACTTGAGCGACCCCCAGCCCCGGAACACAGGCCAGAGGCCAACAAAGTCCCCCTGAACGTCCCCATGTCGATGCCCATGTCCAACACAATGCTGgactccctccccatcccccacACCGCAGCACACACTCTCACAGTGTCTCCAGTGTCGGCCCCGTCGTCCACCATACAGATGCAGCAGAAGCCGCCGGACGTGCCCGTGGCTATGCCCGTCCCGCTGCCCTTCAGCACCAGCCTCATGGCTCAGAGCACGTCTATCATGACCCCCAACATTATGGCCCCCAGCACGGGCCTCATGGCTCCTATTGGAAGGCCCACGGTCATGCCGCCACACCACACCATGGTTGAAGATGAGAGACTGAAGCACTTTGAACAGGAAGCAGAGAAGATGGTGGCGTATCTACAGGACAGTGACGACCGGCTGGCTGCCAAGAACTCAGCACCCGAACCAGCCGGCCTGCCGCTCACACACGAGGCTGCTCTGAAGTGGTTCTATAAAGACCCCCAGGGAGAGATGCAGGgtCCGTTCAGTAACCCGGAGATGACAGAGTGGTTCCAGGCAGGCTACTTCACAATGACCCTGCTGGTGAAGAGAGGCTGTGACGAGGTCTTCCAACCGCTGGGGGAGATCATCAAAATGTGGGGCAGGGTCCCCTTCGCCCCTGGACCAGCACCGCCACCCTTACTGGGTGACGCTGGGGACCAGGAGCGTCTGAAACTGCAGCAGGAGCTGACTGCCCTCAACCTGTACCAGCTGCAGCAGCTGCAGTACCAGTACCTGTTGAGGCAGCAGTACGCCCAGGCCCTGGCCCAGCAGAAAGCCCAGGCCCTCAGCTCAGCACcacaccagcagcagcagcagcagcagcagcagatcaACCTGCTCCTCCAGCAATACCAGGCCCTCAAGATGAGGTCAGCGGAACACACAACATCCGAAAGTCTCTTAACTCCGGTGACGCGGTCCATGTCTGTACCAGAGTCCCAGGGTTCTGTGTGGGAAATGCAGCACCCCTCTCAGGTCTCTTGCACACCAAACATCCAGCAACCTGCCCCAAGCGCGTGGGAGGGCAGCAGTGTGTGGGATCTGCCCATAGACTCCATGGCCCAGGCCCCCACCATAGAACAGATGCAACAGCTGGAGAAGAACAAGGCTGCTAAGgtctctcctcctcatctactGGAGATGGAGCGGTGTGAGGCTGAGCTGAGGGccaagagggaagaggaggagaaggagaggaaaagacTGGAGGAAGCGTTACGGTCCCGACAGGAGGCGGAACGCAAACGCCTGGAGGAGGAGCTATCACGTCATAAAcagGAGGAGGAGTTGAGGCAGCGGGAGCAGGAGGAGGCACAGCGCAgacagaaggaggaagaggaacggCAGGCACAGGAGGAGGCTCTCCGCAGactagaggaaaggaggagggaggaggaagagcggCAGCAAAGGGAAGAGTTCCTCCATAAACAGGAGGAGGAGCGCCggaagcaggaggaggagcaCCGGGAGGAGGAGCGCCGGAAGCAGGAGGAGGAGCGCCGGGAGGAGGAGCGCCGGAAGCAGGAGGAGGAGCGCCGGAAGCAGGAGGAGCTGGAGGCCCTGAGGAGGTGCGAGGAGGAGAAGCGGCTGGAGGAGGAGGCGGTGGCGGCCGCGATGGCGTTGGCAAGGCAACAGCAGGAGGAGGCGAAGAGGAGGGAGCAGGAGGCCGCGAGGCAGCAGGAGCTAGCcagacagaggcagcagcagcaggaggcgcTCCGCCGActacagcagcaacagcagcagcaacagctaGCCCAGATGAAGCTGCCGTCGTCCTCTAAGTGGGGCCAGCAGTCAGCAGTCACGGCAGCAGCCATCTCCCAGTCCCAGAACGCCTTGTCGCTCTCTGAGATCCAgaaagtggaggaggagagggaacgaCAAGCACGAGAAGAGCAGCGGCGCCAGCAAGCAGAGCTCCTAAAGCTCCAGCAGCAGCAGGCCCTGCAGGAGGCCCTGCAGCCTCAGGCCAAGCTCTCTGGTTGGGGCAGCGTGGCCAAGCAGCCGGCCGCCACCAAGTCCCTGCTGGAGATCCAGCGGGAGGAGGCCCAGCAGGTGAAGCAGAGGAAAGAGCAGGGGGGTGGGAGCCAGCAGCCCAGTCACCCCACCGTCACCCAGCCGAACCGCTCCCAGAACAGAGCTACCACTGCTCTGAGTTCCTCAGTGTGGGGCTCGGTGGCCACCAGCAGCATGGGCGGCGGGGCGCCTAACTGGGGCGGAGAAAGCAGCAGCATCTGGGGCGACAGCACCAACTCCAACATGGGCTTCTGGGACGAGACGGCCCAGCCCCCGCCACAGGCCCCACCCCCCGCCAGGAAGCCCAACGCTCAGAAGAACAACAAGGCCAACGCCAACCTCAGCAGTCGGGCCAAtaagaaggtggaggaggaggagaagctgcTGAAGTTGTTCCAGGGGGTTAATAAGAGCCAGCAGGATGGCTTCATGCAGTGGTGTGAGCAGACCCTGCACACCCTCAACACCGCCAACAACCTGGACGTCCCGACATTTGCGTCTTTCCTGAAGGAGGTGGACAGTCCGTACGAGGTGCACGACTACGTGCGCGCCTACTTGGGGGACACGTCTGAGGCTAAGGAGTTTGCCAAGCAGTTCCTGGAACGCCGTGCCAAGCAGAAGGCCAACCAACAGAAAGAGCCCCAGGCCCCACAGAACCAGCAGCCGACTCTCAAACAGCGACAGCAACAGCAGGATTCAGTGTGGGGCGGGACGGGCTCTCCGTCCCGGTACCAGTCTAACCACACAAGCCTCCAGCAGCAGGCACGTTTCGAGACCGTCACCTcagggaagaagaagaaaaagcagAAGATGGTCCGGGCAGACCCCAGCCTGCTAGgttTTTCTGTGAACGCGGCGTCTGAGAGGTTGAATATGGGCGAGATAGAGACGGTGGAGGACTTTTAAAGGGACTGCTCTGCCGCCACTGACTCAATCCGTTTTGAACAGCTGTCATTTTCCCCGCCCACACGTCCCGCCCCCCACCTCCCCGTCCCAATccttttactttttatttttgaaaatgcatcctctttctgttctctaaGTTAATTTAATGTTTGtcattggaagctggggatgctTTCCAGTGCCAAAGGGCCCCCACCCCAAAAATCCCTAATGAGTATTTTGCCCTATGGGAGACCGGGAGAAGGCTAATGACGCAGCCAGACAATCAAACGGAACATTCACATTCACGCAATGAAACATTGAACGAACTGACCAAAAAAAATCTATGAATTGAAATCTGACTTCTCTCTGAGAAGAAAGCAGAGCTAAGGGGATGAGGAGGATGTGGATATTTCTCCCTGTCTATGGTTGGCTGTTCAGTTCCCTCCTAGTCTCTGGTGTCTGAAAGTACCCAAAAAGAGAGTCCATTTCCTGATGCAATCATCTCCCCATGGAATTATTTTACGCGTGGACATAAGGGTGGGGATGCGGGGGGATTTTCGATGAAAAAAATAGTCATTTAAACcttttttcttttatttttttatttattgaaagTTTTTCCTCCCCCTTCCCTTTTGTTAAATCTTCTCTCCTCACTCCTGTTTTCTGCCAGTTGTTTGTGGATGATGGTTGCATTGTAGGAGCTAAGGATGTGTGCCCGCTGATGTCCTGTTTTAAGGACATGCTCGAAAGTTCCAAGTAGTTATCCATTTCTTGTAAAATACTAGGCTGTTTAAAGAATAAACTTTCAATTCTGCATCTGTATTATAATATATGAAAATGATGAACTACTGGAGTCATACTTTTCTATTGCGGTATGAAATAAAACAGTCTCTTGTGTGGGCTGTTCACACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825799 lncRNA downstream 6735 57869433 ~ 57870062 (-) True G726921
TU825760 lncRNA downstream 9043 57866172 ~ 57867754 (-) True snorc
TU825773 lncRNA downstream 16840 57858233 ~ 57859957 (-) False LOC110530228
TU825772 lncRNA downstream 16840 57858283 ~ 57859957 (-) False LOC110530228
TU825793 lncRNA downstream 20444 57856153 ~ 57856353 (-) True G726915
TU825845 lncRNA upstream 81519 57988734 ~ 58054146 (-) True G726967
TU825913 lncRNA upstream 228117 58135332 ~ 58140314 (-) False G727026
TU825915 lncRNA upstream 228117 58135332 ~ 58140314 (-) True G727026
TU826278 lncRNA upstream 276136 58183351 ~ 58190704 (-) True LOC118965534
TU826275 lncRNA upstream 357723 58264938 ~ 58268699 (-) True G727364
XM_021613127.2 mRNA downstream 412 57866164 ~ 57876385 (-) False snorc
XM_021613124.2 mRNA downstream 12632 57858233 ~ 57864165 (-) False LOC110530228
XM_021613122.2 mRNA downstream 63740 57811543 ~ 57813057 (-) True lpar5a
XM_021613121.2 mRNA downstream 72946 57801838 ~ 57803851 (-) True LOC110530224
XR_005052923.1 mRNA downstream 156112 57646363 ~ 57720685 (-) True LOC110530221
trnaw-cca-3 mRNA upstream 14488 57921703 ~ 57921774 (-) True trnaw-cca-3
trnav-aac-153 mRNA upstream 16007 57923222 ~ 57923294 (-) True trnav-aac-153
XR_005052925.1 mRNA upstream 275417 58182632 ~ 58190996 (-) False LOC118965534
XM_021613131.2 mRNA upstream 569257 58476472 ~ 58477642 (-) True LOC110530234
XM_036985808.1 mRNA upstream 1203908 59111123 ~ 59146231 (-) False LOC110530949
TU825771 other downstream 12920 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 30108 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 65375 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 571271 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 739684 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 4137820 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4273472 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 7083086 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 7610952 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 8193881 66101096 ~ 66101627 (-) True G736841

Expression Profile