RNA id: trnaw-cca-3


Basic Information

Item Value
RNA id trnaw-cca-3
length 72
RNA type mRNA
GC content 0.57
exon number 1
gene id trnaw-cca-3
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57921703 ~ 57921774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTCGTGGCGCAacggtagcgcgtctgactccagatcagaaggttgcgtgttcaaatcacGTCGGGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825799 lncRNA downstream 51641 57869433 ~ 57870062 (-) True G726921
TU825760 lncRNA downstream 53949 57866172 ~ 57867754 (-) True snorc
TU825773 lncRNA downstream 61746 57858233 ~ 57859957 (-) False LOC110530228
TU825772 lncRNA downstream 61746 57858283 ~ 57859957 (-) False LOC110530228
TU825793 lncRNA downstream 65350 57856153 ~ 57856353 (-) True G726915
TU825845 lncRNA upstream 66960 57988734 ~ 58054146 (-) True G726967
TU825913 lncRNA upstream 213558 58135332 ~ 58140314 (-) False G727026
TU825915 lncRNA upstream 213558 58135332 ~ 58140314 (-) True G727026
TU826278 lncRNA upstream 261577 58183351 ~ 58190704 (-) True LOC118965534
TU826275 lncRNA upstream 343164 58264938 ~ 58268699 (-) True G727364
XM_036985795.1 mRNA downstream 11563 57876797 ~ 57910140 (-) True LOC110530229
XM_036985796.1 mRNA downstream 11923 57876797 ~ 57909780 (-) False LOC110530229
XM_036985788.1 mRNA downstream 14488 57876797 ~ 57907215 (-) False LOC110530229
XM_036985789.1 mRNA downstream 14488 57876797 ~ 57907215 (-) False LOC110530229
XM_036985792.1 mRNA downstream 14488 57876797 ~ 57907215 (-) False LOC110530229
trnav-aac-153 mRNA upstream 1448 57923222 ~ 57923294 (-) True trnav-aac-153
XR_005052925.1 mRNA upstream 260858 58182632 ~ 58190996 (-) False LOC118965534
XM_021613131.2 mRNA upstream 554698 58476472 ~ 58477642 (-) True LOC110530234
XM_036985808.1 mRNA upstream 1189349 59111123 ~ 59146231 (-) False LOC110530949
XM_036985809.1 mRNA upstream 1189349 59111123 ~ 59146231 (-) False LOC110530949
TU825771 other downstream 57826 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 75014 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 110281 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 616177 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 784590 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 4123261 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4258913 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 7068527 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 7596393 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 8179322 66101096 ~ 66101627 (-) True G736841

Expression Profile