RNA id: XR_005052925.1


Basic Information

Item Value
RNA id XR_005052925.1
length 1511
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC118965534
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 58182632 ~ 58190996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATGCCAGCATCCAAGAGCACTGAACATCGGTCTGGACTGTGAAATGAATCATTATCTAATGGCAGCAGCATATACCAGAGAGCGTCTAAGTGTCATCTAGGGTCTGTGTCTGCTGTGTATTTAGTTGTATAACGGTGCATTAGGCGCTGTGTTCCCACGAGATGTCTCTTCACATTGAAGCCTCCAGCGTGAAGAGACAGCCCTAGGGTGGCGTTCAACCCTCCCGCTCCTAACAGCGGCTGCGTGTCGTCTGTCAGACGAAAGACGACGGAGACTCTGAGGCCGTCAAATACAATAAGCGCGTGTGTCCGTTAAAAACCGAAGAAACGAGAGCGGACTGGGGGAAAGGTAAAGAAAGGATCGGTGAAAAAAGgacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaacactgacctgttcaccgaacGTGCTATCTGTCCCAGGCCTGCTcttttaaactctctagagacagcaggagcggtagagatactcttaatgatcggctatgaaaagccaactgacatttactcctgctgacttgctgcacccccgacaactactgtgataattattattttatcatgctggtcatttatgaacatcttggccatgttcctGTTATAAAaatccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggttttggtgcttctacacctgcattgcttgctgtttgggggtttaggctgggtttctgtacagcactttgagatatcagctctATAAATAAatccatttgatttgataactggttttcagtttccccctcccccactcagaccactcccagacagtcctagcaaaatccctgcttgagaaatagttttttgctaaaaaaacaaacatttgaatggaaatctattacagtaaggtacttaattgttactcagaaatgatttgattGTGATACAAAgaaatggctgcattgggcctttaaggaGAGACTGtttgaagagagacagaaagtgaaAGGCAAAGATTAAAATAGAATGACCTccggtataaaaaaaaaagttgtaactGACACATGAAAGAACATCTCTTGAAATTTCCATTTGAAGACGTAAATGGTGTCCATTCAGGCAGGTCTATATGCACTAGTTCTGTACTATATGTCTGTCTGAACCTGTTCCTCTCATCCATCACACAGCAGGAACACATGCCCTCCAGTATACTATACCCAGGTTCTTAAATCCTGCCACTGGAGACCCACATTTCTTTATTCATTTACTCTTTTAGCGTCATATTGTCATATTATTCTTGTTACTaggtattgtttgtttgtttttcatttgGAAACTCTTGAAAACGAGATGGTGCATCTCAAGACATTTCATCCTgcaaatgatttaaaaaaaaaaaaaacatttagccAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825913 lncRNA downstream 42318 58135332 ~ 58140314 (-) False G727026
TU825915 lncRNA downstream 42318 58135332 ~ 58140314 (-) True G727026
TU825845 lncRNA downstream 128486 57988734 ~ 58054146 (-) True G726967
TU825799 lncRNA downstream 312570 57869433 ~ 57870062 (-) True G726921
TU825760 lncRNA downstream 314878 57866172 ~ 57867754 (-) True snorc
TU826275 lncRNA upstream 73942 58264938 ~ 58268699 (-) True G727364
TU826431 lncRNA upstream 241274 58432270 ~ 58433071 (-) True G727514
TU826491 lncRNA upstream 316413 58507409 ~ 58511274 (-) True G727569
TU826494 lncRNA upstream 317841 58508837 ~ 58514799 (-) False G727570
TU826495 lncRNA upstream 320881 58511877 ~ 58513910 (-) True G727571
trnav-aac-153 mRNA downstream 259338 57923222 ~ 57923294 (-) True trnav-aac-153
trnaw-cca-3 mRNA downstream 260858 57921703 ~ 57921774 (-) True trnaw-cca-3
XM_036985795.1 mRNA downstream 272492 57876797 ~ 57910140 (-) True LOC110530229
XM_036985796.1 mRNA downstream 272852 57876797 ~ 57909780 (-) False LOC110530229
XM_036985794.1 mRNA downstream 275417 57876797 ~ 57907215 (-) False LOC110530229
XM_021613131.2 mRNA upstream 285476 58476472 ~ 58477642 (-) True LOC110530234
XM_036985808.1 mRNA upstream 920127 59111123 ~ 59146231 (-) False LOC110530949
XM_036985809.1 mRNA upstream 920127 59111123 ~ 59146231 (-) False LOC110530949
XM_036985810.1 mRNA upstream 920127 59111123 ~ 59146231 (-) False LOC110530949
XM_036985811.1 mRNA upstream 920127 59111123 ~ 59146231 (-) False LOC110530949
TU825771 other downstream 318755 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 335943 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 371210 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 877106 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 1045519 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 3854039 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 3989691 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 6799305 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 7327171 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 7910100 66101096 ~ 66101627 (-) True G736841

Expression Profile