RNA id: TU827681


Basic Information

Item Value
RNA id TU827681
length 1305
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC110530949
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59111123 ~ 59146231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGGACCAAAGGGGAAGCCCTCTCTAGTTACCTGGCACTCGCCCCGCTCGCGCTTCACTTCATGCTCCGAAAACCAAGCACGCCTCGCTCTCCATGCTTGACGAGAAAAAtaaatggagagaaggagaagaagaggataaacaaaaaaaaaggaGTGAATTAAACCCCAACAAAAAACCACATTCACTCATTCAACACTCTGCGTTTGATTTGTAATAAGtggcagagagtgggagaggactGGGTAAACAGTTTTCCTTCCATGGATGTGCTTTCAGGGTATATTGTGATGAAGGGAGGAAAATAAGGTTTTAGAGCACAATCCCGAGGCATAAGGATGATGTATGGACCTGCAATAGGCACACCGCTCACTCAGCCACAATGCTCTATGTAAAGACACTCACAATGTCTTTGGGGAATACTGCGTGCTGAGACTTTGTATTATTTGATATGATTTGGGGAAATTAAATGTGTTCTATCAGGAGAAGAAAAACTGCCATCAATTTGATTTGTAAAAATGACTCTAAGCATATGTACTGTAGGTCTGGACAGTGAAGGTCTGGACAGTCTTTCACCCAACTaggatgatagagagagaaatatactGTAGTAGATGGAAGCTGCTGCAACCCAAAGAAGTGCAATACATTCAAACCTCAGATGAAATGAATTGACACATCCCTGTATAACAATCTCCTCAATTAACTGACTACATCCTTTTTGTAATCCATATTGTTTTGAGCAAAAACAATGGTAGCTGGGTTGCACGGATCACTTTGAAGCGAGAATCATCCTGACACAAGATCTGTGCACGTACAGGTAGCTTGGACTTTTGCATAAACCTTGCATTGATTTCAATGGGAGATTTGAGCAGAAATCGGAGTAGGACCATGGCCTATATTCAGAAAGTATCTCTGAGcaggagtactgatctaggatcaggtccctcctgtccatatAATCATATTAGTTATGATCAAAATGGCAAAACAGCATTCCTACTCCGAtacactttgtgaatacaggcccaggctACCAGTCACAGTCCAATCAAATGTAAATTGGACCTGGTAAAACATACCACTCTCATTCATTTAGTATTTATTCAGTCCACCTCTTCTCTGTTAGTATCCCTGATCACAGCATTCAGTTGTGTGGAAATCAAACCTTTATTTTTCTGCCTTGTTTCTTTTGTAAACATATATCATTTTCATTTATGACTGCATAAGATGATTTGTGTTTTAATATGTCTCGTGTCAAATGCAGCACTATTTACTAtttataataaaatatataaaaatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827190 lncRNA downstream 3727 59107116 ~ 59107396 (-) True G728226
TU827188 lncRNA downstream 4892 59105888 ~ 59106231 (-) True G728224
TU827186 lncRNA downstream 5293 59104752 ~ 59105830 (-) True G728222
TU827010 lncRNA downstream 129843 58980900 ~ 58981280 (-) True G728058
TU826828 lncRNA downstream 265783 58845060 ~ 58845340 (-) True G727888
TU827727 lncRNA upstream 50131 59162558 ~ 59165729 (-) True G728711
TU827728 lncRNA upstream 50956 59163383 ~ 59167725 (-) True G728712
TU827742 lncRNA upstream 72894 59185321 ~ 59185625 (-) True G728725
TU827766 lncRNA upstream 168572 59280999 ~ 59281213 (-) True G728749
TU827701 lncRNA upstream 174501 59286928 ~ 59288820 (-) False LOC110530240
XM_021613131.2 mRNA downstream 633481 58476472 ~ 58477642 (-) True LOC110530234
XR_005052925.1 mRNA downstream 920127 58182632 ~ 58190996 (-) False LOC118965534
trnav-aac-153 mRNA downstream 1187829 57923222 ~ 57923294 (-) True trnav-aac-153
trnaw-cca-3 mRNA downstream 1189349 57921703 ~ 57921774 (-) True trnaw-cca-3
XM_036985795.1 mRNA downstream 1200983 57876797 ~ 57910140 (-) True LOC110530229
XM_021613138.2 mRNA upstream 101967 59214394 ~ 59243807 (-) False LOC110530239
XM_021613139.2 mRNA upstream 101967 59214394 ~ 59248869 (-) False LOC110530239
XM_036985813.1 mRNA upstream 104027 59216454 ~ 59243810 (-) True LOC110530239
XM_021613136.2 mRNA upstream 137275 59249702 ~ 59279534 (-) False LOC110530238
XM_021613135.2 mRNA upstream 137275 59249702 ~ 59279537 (-) True LOC110530238
TU825771 other downstream 1247246 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1264434 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1299701 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 1805597 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 1974010 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2932608 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 3068260 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5877874 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 6405740 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6988669 66101096 ~ 66101627 (-) True G736841

Expression Profile