RNA id: XM_021613138.2


Basic Information

Item Value
RNA id XM_021613138.2
length 4320
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110530239
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59214394 ~ 59248869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTTGGGCTGCTTTGAGCGTTAAAGAGTTTTTAATGTCCGCCATGTTGGCCATGGCGTACTGAACCACCGATAGACAGGGAAGCCTCTGAAAAAAAGACCGAAATAGAGCGATCAAGATCCGGGCCTTCCCGGCTCCGTTCGCGACGCCCTAACTTTAGCTTTAATAGGCCGAACCGTATATGTCAGAATAACCGCACAGAATCATCCATGAAAGCTCAACTCGAAACCGATGTGAATTTAAGGAGATTGGATAGATTTATGTTGCATCTCGAATTTTAAAAAATGAGTAAATTGTCGTTTCGGGCACGGGCGCTGGACGCTTCCAAGCCACTACCCGTCTTCCGATGTGAGGATTTACCCGACCTGCATGAATATGCATCTATTAACCGGGCAGTGCCACAAATGCCGACGGGGATGGAGAAAGAAGAGGAATCGGAACACCATCTCCAGAGAGCCATGTCGGCCCAGTCGGTGTATGGAGAGAAACACAACATGGTCATCCCCGTCCCGGAGGCAGACGGCAACATCGCCTACTACGAGTCCCTCTACCCCGGGGACTTCAAGATGCCAAAGCAGCTTATTCACATACAGCctttCAGCCTGGACACGGAGCAGCCGGACTATGACCTGGACACAGAGGATGAGGCCTTTGTTCACAaactgaagaagaagatggagatCACCTTTTTACAGTTTGAGGAGATGATCGACCGACTGGAGAAAGGCAGTGGGCAGCAGGCGGTGAGCCTGCAGGAGGCCAAGCTGCTGCTGAAGGAGGATGACGAGCTGATCAAGGAGGTGTTTGACTACTGGACCAGGAAGAGGAAAAACAACAAGCACGGCACGCTGCACCCCACTGTGAAGCAGGAGAAGAGGGACGGATCCAGCACCTCAGACCCCTATGTGGCCTTCCGCAGGAGGACGGAGAAGATGCAGACCAGAAAGAACCGTAAGAACGAGGAGGCTGGTTATGAGAAAATGCTGAAGCTGCGGAGGGACCTGAGCCGAGCCGTCACCATCCTGGAGATGAtcaagaggagggagaagagcaagagagagctgCTGCACCTCACCCTGGAGATTGTAGAGAAGAGGAACGGCATGTCCGACTTTGGTGGTGAGATCATGGCTGAAGTGCTGGCCCAGCGTGCACTGGACAAGCCTGCCCATATTATCCCTCTGGTGCCGCTGACCAACAGCAACCAGTACAGACATCAGGACCACATGGACCTCAAGGAGTACAAGTccaagCCGGAGAAGACCGAGGTCGTCAGGCAGAAGAGGAAGTATGAGAAGAAGCCTAAAGTCTTACCCCTGTCAGCTGCTGCCCTCCACCACTCTGGTCCCTCTGTGTTCAATGCTAAGGATGTCCACCAGTATGACTTCCCCAGCTCAGATGACGAGCTGCACTCCCAGATGCACTCAGGTTCCTCAGAAGCTGAGGAGGAGAACGACCCAGACGGTTCTTTTGCCTTCCGGAGGAAAGCAGGCTGTCAATATTATGCCTCTCAATTGGACCACGGGGGCAGCTGGCCGTGGGTCAGTCCGTCAGAGGGCGGAATGGGAGACACTCGTTACCGCTACTGCCTCACCACCCTCACCGTGCCACCACGCTGCCTGGGCATGGCGCGACGACGCCTGGGACGAGGGGGAAGGGTTTTGCTGGACAGGGCGCACACAGACTTTGACAATGTATTTCATGGGCTGGACTCTGAAATGCTTGACCTGCCGCCCCACTCTCCAGTCACAGACAAGTTTGCTAGTACCTCACAAACAAATACCTCGGACAGAACCTCTTCTTATTCATCCTCTTCTGCAGACCTCAGTCAGATACTGTTGAACATTAAGTCGAGCCGATGGAGGCACTTTAGGCCCCGGACACTATCACTACATGACGAGGACAACGTGGTCACAGACCCCTTGTTCAGGAGGCTGGGCAGGGGCCTGAGTCGCATCACCTCTACCCTGGCTGGTACCACTGGCCCCCTGAGAGGAGCTGGCCCCCCGGCCCCCACAGCTGCTTTTACCGCCCAACAATACCAGCAGCATCAGGAGCAGCTGGCCTTGATGCAGAAACAGCAGCTGGAGCAGATCCAACAGCAACTGCAAGCCAACAGCACCACTACCAACAGCACGCAGGTTTTGGTGTCCAAGACGTTAGATTGTGCCTGTGCCCAGTTTGCTGCCTCTGCCCTGGTGACCACAGACCAGCTTCTGGCCTTGAAGACCAAGGATGAGGGTGGACCGGGCAGCGGGGTCAACGGGGTCCTTCCACCCTCAGGTGTCTACAAGGGCTTTCACCTCACTAGCACAGCATCCCCGTCGTCTGCTGCCCCCACCTCCACCCCTACCCctctgaccaccactaccccctccttccccttcctgttgcccagcaacaacGGCACCACCACTCAGGTCCTGAtggggaacaacaacaacaacaacctccgTCTGAGCATGTCCTCCCCCGGGGGACTCCTCACCAAGCGCCACATACCCCGGACGCTAAGCCACTCTCCCGTTACCGTGTCGTCATCTGCCTTAAAGTTGGCTGCCACCGCTAACTGTCAAATGCCTAAGGTCTCCACAAACACCCCGTCAATGGACCTGGTGCcaagGGAAAATCAGGATCAAGAAAAGCCAGCACTAAACAGCATTTTGGACAACACAGTGGCTATGGAGGTCACGTGACCTCGGAACACGGACTGGACTGTGGGCTCACCCGGGAACTCATTTAGGTGCTATGCATCGTAGAGTTGTGAATGCAAGGAAGGGGTAGTGGAATGCGCACACAGCATACAACGCTGTCTCCATGGTGACGGTCGGGACTTAATTGCAATGGTCGTCTCGTACTTTTTTCATTTCCTATTTGTTACTGTTGATAAGCAATATCAACATCTGTAATTATGAATATGGCAATTATTTGTACAGTACCAGATATTtgtaataccccccccccccccccctccttgtaTATAATGTTACTTGAATACGGAAATTGTTCATTTGATGTTTTGCacttgggatatttttttttaatgtaaaaagACAAACTGCAGCTGGTTCGAGTGTGAGGTGGGTGTGAGTTGTACAACAGTGTCATCACGTCAGTGCATGGTGTGGAACCTGCTGTTTTATCTATTTATTGTGCCGTGTTTACAGTTTTTGTTTTTCTACGTTTTGTTAGTTGTATTTTTTGTAATTCTTTTTTTTGTCCTCATTGGTTCCTGTGCTGTAGTCTGGGTTTAGGTAGCTATGAACTTCTCTGTCTTTGTTCATTGTATCATGTGGAAACAAATGGTGACATGCATTCATACAGAGTTGGTGGGTGTGGATTTAAGGCATCGGTTTGTCAGTCAGGGTAATCACTTAAGATCTTCCATTTTTAAATTGTTCATGAGACAAAGTAACACAATGGGAATGAAGTCTTGTTCCTAGAAGTCACTGCTGCTTAACTAAGCACTCTTTTTGTTTAGATGAATGCTGCTTTTATATGATTTAGGGCTCTGGTTTGTTTTCACATCAGtaccttatttttatttttttcccaatTATTTTGTGAAAATGTCATTATTTTTGTATCCCCCTTCCGtttctgatgatgatgattgtatgTTCATCGTTGAAAGACTTCATTATTTTGTTACTTGTTGATGAAATGCGATCGGGTAGAGGAATGTAGTAACATCTTGATTACATGTATCATTCCGGTTTATACGTAACAGAAGAAAACATGTATAAAAAGGCAGATTTCTTTGCTTTTAGGATAATAATTCTCCAGAACGCTGCGAGGCCAAGATGAACCACAAGTATCGGGTGCCTTCCTTTTGGAAATACCTCGTACTCTCTTCTGTGAAGAGTACGGTACTAAACAAGGCTACtagttagttgttgttgttgtaccaCCAATATGAATGCCCATTCCAATGGCATAATTGATcaattgtgttttgttttttttttatccacaaAATGAAAAATTATCttctcacaaaaaaataaaaacccagGGCATTATGTGTTTGGACCAGCATgtatcttgtttttttttatttttttgtctctTCCCGTTGTTCCATGTTGTGGTCATAGTAGAGTGGGAAAGAGTAGGGTGAAGTTAACCCTTGATGCTTATCTGGTCCTCTAGCTGTTGGTAGAACATGACGATTCCTGGGGCCATTCATAcgtaaaaatgtatgcacgctTGACTAAGTCGCTTTGTGTAAAAGGGTCTGTTAAATGGCATATTTCCTCTAGTAATGCAGCAGTTATCtccatatcaaatcatttctgggtatcaattaaagacatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827742 lncRNA downstream 28769 59185321 ~ 59185625 (-) True G728725
TU827728 lncRNA downstream 46669 59163383 ~ 59167725 (-) True G728712
TU827727 lncRNA downstream 48665 59162558 ~ 59165729 (-) True G728711
TU827681 lncRNA downstream 101967 59111123 ~ 59112427 (-) False LOC110530949
TU827680 lncRNA downstream 101967 59111161 ~ 59112427 (-) False LOC110530949
TU827766 lncRNA upstream 37192 59280999 ~ 59281213 (-) True G728749
TU827701 lncRNA upstream 43121 59286928 ~ 59288820 (-) False LOC110530240
TU827770 lncRNA upstream 46711 59290518 ~ 59290850 (-) True G728753
TU827771 lncRNA upstream 50605 59294412 ~ 59294648 (-) True G728754
TU827714 lncRNA upstream 51097 59294904 ~ 59297430 (-) False LOC110530240
XM_036985808.1 mRNA downstream 68163 59111123 ~ 59146231 (-) False LOC110530949
XM_036985809.1 mRNA downstream 68163 59111123 ~ 59146231 (-) False LOC110530949
XM_036985810.1 mRNA downstream 68163 59111123 ~ 59146231 (-) False LOC110530949
XM_036985811.1 mRNA downstream 68163 59111123 ~ 59146231 (-) False LOC110530949
XM_021613131.2 mRNA downstream 736752 58476472 ~ 58477642 (-) True LOC110530234
XM_021613136.2 mRNA upstream 5895 59249702 ~ 59279534 (-) False LOC110530238
XM_021613135.2 mRNA upstream 5895 59249702 ~ 59279537 (-) True LOC110530238
XM_036985814.1 mRNA upstream 42848 59286655 ~ 59338189 (-) False LOC110530240
XM_021613142.2 mRNA upstream 172601 59416408 ~ 59668443 (-) False LOC110530242
XM_021613143.2 mRNA upstream 172601 59416408 ~ 59668443 (-) False LOC110530242
TU825771 other downstream 1350517 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1367705 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1402972 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 1908868 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2077281 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2801228 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2936880 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5746494 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 6274360 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6857289 66101096 ~ 66101627 (-) True G736841

Expression Profile