RNA id: TU827701


Basic Information

Item Value
RNA id TU827701
length 1893
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110530240
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59286655 ~ 59338189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtccagagggGTGCTTGCCCTGGCCCTAGACCTGtgtctagttccgacagtgcctTTTGAAAGTTTGTGTTGCCTTTTCTCTACTGATTCTGTTCATAGCAGTACATAGGCGTCCACTGGTAGTGTCTGATTCTGTTCTGATCAGAGCAGTACATAGGCATCCACTGGTAGAGTGATTCTGTTCTGATCAGAGCAGTACATAGGCATCCACTGGTAGAGTCTGATTCTGTTCTGATCACAGCAGTACATAGGCATGCACTGGTAGAGTCTGATTCTGTTCTGATCACAGCAGTACATAGGCATCCACTGGTAGAGTCTGATTCTGTTCTGATCAGAGCAGTACATAGGCATCCACTGGTAGAGTCTGATTCTGTTCTGTACATAATTATGTATAAGCATCGGCTGGTAGAGTCTGATTCTATTCCGATCATAGCAGTAAGTAGGCATCCACTGTTAGAGTCTGATTCTGTTCTGATCATCATAGCAGTACGTAGGCATCGGCTGGTGGAGTCAGATTGGCAGGACTTCATGCCATCCCCATAGTACATGACACATCCAACTTATTGTACATAGGTTTTAATATATTTGAGCGgccttttatatatataaaaaatacaaactGCTGCAGTATCCTTTCTTTGTGCTCTCTGTATCATAGGTGATGTTGTCTGGATGTCCTCATGTATTTAATGGGTATTTTGTGTTGTTATGTTCCATTGGTGCTCTACAATGCTGCCTGGGAAAAGAGTGTGTTATTATGGCCAATGGTTATATTCGCTACAAAGGCCTAACAAGAAGAGAGTGAAGAGCCCATcggctgtgtctgaaatgacaccctattccccagagTGCACTACGTGCCCTGGTCAATAgccgtgcactatatagggaatagtgtggcatttgggacgcaaccataCAACAGACTGGAGGGGGTGAAGCATCTCTAGGAGAGAAAAAAATGCTGCTATGACAATActtgggccagtttcccagacacagattaagaaTCTCTTTGagaatgctttttagtccaggacaagGCTTAATCTGGGTTCTGGGGAACTGGCCCTACATGTCTATGGTGGAATGATGGACCTTGCTAGAATGAAAGATACTCTTCTGTCATGCTGTTTTCATGTACTGTAGCTCACATCCTATGCGCTCTCCTTTTGTCTGTATTGAACACTAACGTAAAGAGTTCATGCAAAACAAAGTACTATATAAAACGGCAAAAAACATGGATCCAAGGTTCAATGAATGGATGTGATGTAGCTCTACCGTTTATTCCTTCGGCCGGGGTCTATTTGAGCTTCTATGTTTCGCCTCTGTCATGTTTCCTTCATTCAGGGAACCTAGTTAGACAGATGCTTCATGGTTCTGCTTTGAGCTCTTAATGGTATTCCATATTCCACAGGATTAGAATCATTCGAATTAGAATGAGTCATTCCTGTTTCTATGGTTCCACCTCTCAAAAATGTAAGGGCCTCATGTTTTGGTGTGGTCCTCTTCAATAGGAAAGGATGCTGCAGCATTAGATGTGAAAACAATGTTGCACTGATATATTTAAAAGATCTTTGTGTTGTTTATGATATTGTTTTGTGAAaaaaaaattgagagagagaaagcgagagaaggaTAAGACAGTGTTACAGATAACTATTTTATATGGTTTCAGATGACATGATATAATTCTGAAATGTACAATTATGGAGATGTTTTTCATTATTGAAAAAGCTATACACGTCTCTTTACTTACGTAATGTTTATATTTAGTTGGTATGTTATATCACcttgtgtttttgtactgtcacAAATGTCTGTGCCATTTTTTtctacaaaatgtttttttttcttcaatactGCTAAATGTAATTTGCCATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827766 lncRNA downstream 5715 59280999 ~ 59281213 (-) True G728749
TU827742 lncRNA downstream 101303 59185321 ~ 59185625 (-) True G728725
TU827728 lncRNA downstream 119203 59163383 ~ 59167725 (-) True G728712
TU827727 lncRNA downstream 121199 59162558 ~ 59165729 (-) True G728711
TU827680 lncRNA downstream 174501 59111161 ~ 59112427 (-) False LOC110530949
TU827770 lncRNA upstream 1698 59290518 ~ 59290850 (-) True G728753
TU827771 lncRNA upstream 5592 59294412 ~ 59294648 (-) True G728754
TU827714 lncRNA upstream 6084 59294904 ~ 59297430 (-) False LOC110530240
TU827772 lncRNA upstream 8773 59297593 ~ 59297863 (-) True G728755
TU827706 lncRNA upstream 47067 59335887 ~ 59338147 (-) True LOC110530240
XM_021613135.2 mRNA downstream 7391 59249702 ~ 59279537 (-) True LOC110530238
XM_021613136.2 mRNA downstream 7394 59249702 ~ 59279534 (-) False LOC110530238
XM_021613139.2 mRNA downstream 38059 59214394 ~ 59248869 (-) False LOC110530239
XM_036985813.1 mRNA downstream 43118 59216454 ~ 59243810 (-) True LOC110530239
XM_021613138.2 mRNA downstream 43121 59214394 ~ 59243807 (-) False LOC110530239
XM_021613142.2 mRNA upstream 127588 59416408 ~ 59668443 (-) False LOC110530242
XM_021613143.2 mRNA upstream 127588 59416408 ~ 59668443 (-) False LOC110530242
XM_021613144.2 mRNA upstream 127588 59416408 ~ 59668443 (-) False LOC110530242
XM_021613147.2 mRNA upstream 127588 59416408 ~ 59668443 (-) False LOC110530242
XR_005052926.1 mRNA upstream 141317 59430137 ~ 59668443 (-) False LOC110530242
TU825771 other downstream 1423051 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1440239 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1475506 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 1981402 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2149815 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2756215 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2891867 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5701481 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 6229347 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6812276 66101096 ~ 66101627 (-) True G736841

Expression Profile