RNA id: TU827714


Basic Information

Item Value
RNA id TU827714
length 1498
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC110530240
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59286655 ~ 59338189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGATTCTTTTTCAATAGACTGGAgcctcaaggtgtgtgtgtgtgtgtgtgtgtgtgtttgcatgcatgcAAGTGTCTGTGTGAATCCTAACTAACAAACGTTCCTTTTCTCTCTTCCAGATCTTCATTGGGAACCAGAACCATGACACCCCAGAGCTGCGTACGCTGGGCCCTCTGCTTACTCGCTTCCTCAGGATTTACCCAGAGAGAGCCACCCCCGAGGGCCTGGGCCTCAGACTGGAGCTGCTGGGCTGTGAGATCCAGGaGCCCACAACTCTCCCACCGACCACGCCTGTAGCGATCACGTTTGCTGTGACCACGTTCGCTGCCACCACGACCGCGTCTGTGACCACGCCCGCGCCGACGTCAGAAGAGTGTGACGACGAGCAGGCCAGCTGTCACAgtggaacaggaacaggagcaggagGGGAGGACTACGACCCAACAGGTGCCGACCACCagtctcccttgctctctctctcgtcatccCACTCTCCTTCTCACACCCACCCTTTCTCTATCTATCCATCCTCATCATGTCTCGCTCACtcttctctaccctaccctaGAGGATTTATCGTTTGTATATcgttgtattttacatttgtgttACTCTCCTTGTGTATTcatgttttgtcttttgttgtgGTCCCTAGGAAGAATAGCTCCTGCCTCTGCAattactaatggggatccaaataaacaaatgTCTATCTGTCTAATATATCTGATCTATCTATCCATCAATTGTGTTTGTATCCCTGACTGGGGGTTTGACCCACCCTCTGATCCATGAACCCCACTGACTGTGCCCATCTGTGTCTGACAGGTGACACCACAGTGGCAGACCCTATCATAGAGGGAGACCGCATACCAGGTGAGAACGTCCATAAACTGCCGGCTCATGTACTCCACCCATCCATTCATGCATCCATCCTTCTCTCCGCCTCTCTTTTGTTGTCTGTCTATAAAGCAAATGAGGCAGATCATCATGGTTGGATTTTGACATGAAATACAGAACAGGATGGTAGATTTGACCACATAATTGATGTCATCCAAACTACAGAGATGTTGCCAGATCTATGTGTGCTGTTGACCAGTGctgggtcctggtctaatgtTGTGCGCTCTAAAataaataggctgccatttggaacacagccgGTGTTTGGCCTTGAGATGGAAAAACATAACTGCAGAAACAGAAAAAAGAGCCTTGAGTCTCAATTAACTGAGCAAAAGAGTCATATGACAACAACCAGAGGGCACAACAACAGTTAGTTATTCTCTGAGTACTGCAACAGCGTCTGACAACAAAATAAAcattctttgtaaaaaaaaaagaaaaggaaaaaaaaaagatagctaatgtcaaacatgtgtccataaaatgtatatagtatgtataagctggaagtagaagcctgggtattatttttttattagtttactccaattaggggaggggtggtagggttaggggaaaataaaaaAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827771 lncRNA downstream 256 59294412 ~ 59294648 (-) True G728754
TU827770 lncRNA downstream 4054 59290518 ~ 59290850 (-) True G728753
TU827701 lncRNA downstream 6084 59286928 ~ 59288820 (-) False LOC110530240
TU827766 lncRNA downstream 13691 59280999 ~ 59281213 (-) True G728749
TU827742 lncRNA downstream 109279 59185321 ~ 59185625 (-) True G728725
TU827772 lncRNA upstream 163 59297593 ~ 59297863 (-) True G728755
TU827706 lncRNA upstream 38457 59335887 ~ 59338147 (-) True LOC110530240
TU827856 lncRNA upstream 147544 59444974 ~ 59472247 (-) True G728835
TU827910 lncRNA upstream 236602 59534032 ~ 59534245 (-) True G728889
TU827912 lncRNA upstream 241934 59539364 ~ 59539609 (-) True G728891
XM_021613135.2 mRNA downstream 15367 59249702 ~ 59279537 (-) True LOC110530238
XM_021613136.2 mRNA downstream 15370 59249702 ~ 59279534 (-) False LOC110530238
XM_021613139.2 mRNA downstream 46035 59214394 ~ 59248869 (-) False LOC110530239
XM_036985813.1 mRNA downstream 51094 59216454 ~ 59243810 (-) True LOC110530239
XM_021613138.2 mRNA downstream 51097 59214394 ~ 59243807 (-) False LOC110530239
XM_021613142.2 mRNA upstream 118978 59416408 ~ 59668443 (-) False LOC110530242
XM_021613143.2 mRNA upstream 118978 59416408 ~ 59668443 (-) False LOC110530242
XM_021613144.2 mRNA upstream 118978 59416408 ~ 59668443 (-) False LOC110530242
XM_021613147.2 mRNA upstream 118978 59416408 ~ 59668443 (-) False LOC110530242
XR_005052926.1 mRNA upstream 132707 59430137 ~ 59668443 (-) False LOC110530242
TU825771 other downstream 1431027 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1448215 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1483482 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 1989378 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2157791 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2747605 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2883257 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5692871 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 6220737 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6803666 66101096 ~ 66101627 (-) True G736841

Expression Profile