RNA id: TU827706


Basic Information

Item Value
RNA id TU827706
length 1448
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC110530240
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59286655 ~ 59338189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGGAGCTGGAATTTTGGGAGTGGAAATGCCACTGTTACTTTCACAGTTGGCGTCAAGTCGAATGAGAGTGACCCTCTGACATTCTACTGTGTCGGTCAGACAGCGCGCATCGGAAAAGGGCCGAACCGTTACCGAACGAACGCAGTCAAAATGAATAGGAATTGGGGATTTTAGACGGGGTAGTAGTGAGTGGTTGAGATATTATTGAATCTTTTAAGTTTATTATTCCACTTTTGATATACAATTATCAGTTATCGATTGATAGGCTAACTGTTGGGGCACTTTAGGCGTCTGGATTTTCAGAATCAACAATTGTTTTCTGCGtttggattattattatttttattttcctgGGAAATGGCAAGTTCTTATTCTGCGAGAGAAACACGACTTTCCGAGGAAAGAGGAAACAGCAGCTGAATAGGCTACTAAAGGATGCTGGCAACCTGAAGCTGTCAGGCAAATTTCTCCTGCATTTCTGAGACATTTGTTGTTTTGCTTTGAGGACTATAAAACCGTGGAAATATCaaagtttattttttatctttttttttttttttttacagatttgTGTATTTTACAGTCCAATGATGTATTGTGGATTTATACTGTTATTTTCAACCCAACTCATTGTTGTGGCTCCATTGATTCAAAGCGTTGCAGATAAATGTGGAGATAACATTGAGATAACCAATGCAGATTATCTCACCTCGACTGGCTATCCGAACTCATACCCTCCATCACAGCAATGTATGTGGGTGATATCAGCCCCAGAACCGGGCCAGAAGATACTCATCAACTTTAACCCACATTTTGATCTGGAGGACCGAGAATGCAAGTCTACATGGCAAAACTGATCATAAATAAACACTCCTACTGTGAGATGCTTGATGTGAACATGGAAGAGGACTAGACTGGAGCATCAACCATTACCTACTTAAGGGTGTTGTCATTTGAGAGGAAATATAATTGGATCAATGTGTTTTGGTTTTATTATTTGATTTGCTCTGTAGTGCTGTCTACAATATTGTTGGGTCAAAGATCACTTCTATTTTGCCTAGTCCCTGTCTTTAGCTGTGCTACCTAGTGCCGATCATTGATTATGATTTGGGTCACACATACAGtatctgacagacacacacacacacacacacaacaacacacatgcATTCAGCACCTTAGGATAAGTGTGCATTCTCACTAACGCCCATATGTTCACAATCTACCATAAATAACCCCATTTGTACAATGATCCCTTTGTCTGTGTAAATCACAGGCTCACTGACTGTCTTGCACATGGGGTCCTTGACTACTATTAGATCACATTTCACCACCAAGGGACCTATAAAATGTGAGCACTCTTTAGGATTCTGGCAGATACTGGATAGTGTATAGCTTTCTATAAGGAGAGATGTTCTTTGGAACCATGCTTGGAATGCCTTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827772 lncRNA downstream 38024 59297593 ~ 59297863 (-) True G728755
TU827714 lncRNA downstream 38457 59294904 ~ 59297430 (-) False LOC110530240
TU827771 lncRNA downstream 41239 59294412 ~ 59294648 (-) True G728754
TU827770 lncRNA downstream 45037 59290518 ~ 59290850 (-) True G728753
TU827701 lncRNA downstream 47067 59286928 ~ 59288820 (-) False LOC110530240
TU827856 lncRNA upstream 106827 59444974 ~ 59472247 (-) True G728835
TU827910 lncRNA upstream 195885 59534032 ~ 59534245 (-) True G728889
TU827912 lncRNA upstream 201217 59539364 ~ 59539609 (-) True G728891
TU827949 lncRNA upstream 258409 59596556 ~ 59596787 (-) True G728928
TU827950 lncRNA upstream 259547 59597694 ~ 59597902 (-) True G728929
XM_021613135.2 mRNA downstream 56350 59249702 ~ 59279537 (-) True LOC110530238
XM_021613136.2 mRNA downstream 56353 59249702 ~ 59279534 (-) False LOC110530238
XM_021613139.2 mRNA downstream 87018 59214394 ~ 59248869 (-) False LOC110530239
XM_036985813.1 mRNA downstream 92077 59216454 ~ 59243810 (-) True LOC110530239
XM_021613138.2 mRNA downstream 92080 59214394 ~ 59243807 (-) False LOC110530239
XM_021613142.2 mRNA upstream 78261 59416408 ~ 59668443 (-) False LOC110530242
XM_021613143.2 mRNA upstream 78261 59416408 ~ 59668443 (-) False LOC110530242
XM_021613144.2 mRNA upstream 78261 59416408 ~ 59668443 (-) False LOC110530242
XM_021613147.2 mRNA upstream 78261 59416408 ~ 59668443 (-) False LOC110530242
XR_005052926.1 mRNA upstream 91990 59430137 ~ 59668443 (-) False LOC110530242
TU825771 other downstream 1472010 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1489198 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1524465 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 2030361 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2198774 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2706888 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2842540 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5652154 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 6180020 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6762949 66101096 ~ 66101627 (-) True G736841

Expression Profile