RNA id: XM_021613144.2


Basic Information

Item Value
RNA id XM_021613144.2
length 6898
RNA type mRNA
GC content 0.54
exon number 25
gene id LOC110530242
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59416408 ~ 59668443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTCCCCAATCTCTGGGTGAATCTCTTGCTCCCTGCTCTAGTCTCGTCTGGGAACGTcgaaatagagggagaaagactaAACAGGTGGTCAGAAATACAAGCGAACAATGTCGTCCCTGGAGATAAGGTGAAAGATCGTTTGGtctcatctctttaaggattaaAAACCACAGAAACTTCATGTTTCGGCTGACGTTCAAAGAGAGAATTTATCGTCGGTTTTACTTCCGAACCTGGGCAAAATATATCGGATATTAAACTATGAAAGTGACGGTGTGTTTTGGAAGGACTAGGGTGGTGGTACCGTGCGGAGATGGAAATATCAAAGTCCACACTCTCATCCAGCAAGCCGTCATGAGATACAAAAAAGCCATTGCAAAGgATGCCAGCTACTGGTTACAGGTGCATCGGTTGGAGCATGGGGACGGAGGTATTCTAGACCTGGATGACCTGCTGTCTGATGTGGCTGATGACAAAGACCGGctgGTGGCTGTGTATGATGAACAGGACCCTCACCATGGAGGCGACGGCACCAGCGCCAGCTCCACGGGAACCCAGAGCCCCGACCTGTTCGCCACAGAGCTCAACTCCAGCAACATGTCCGCTTTCCAGCCCTACCAGGCCGCCAGCGAGATAGAGGTCACTCCGTCCGCCCTTCGATCCAatatGCCCCTCCACGTGCGTCGCAGCAGTGACCCGGCCCTGGCGACGATCAACGGGCCGTTCAGCGAACCCCGCGTGACCCTGCCGCCAGAGAAACCGTCCAGGAAGAACCCCACCCGCTGGTCCACCACGGCTGGCTTCCTCAAACCACGGCGCTCTGTAGGAGGCACCGGCACTGGCACCAATAGCCTGGAGAGAAAGGGTAATGGTCCGGACACGTACCGTAGTCTCCCCCGGGATGCAGGCACGTGTGCCAACCAGAGAGAGTTCCAGAGAGAGACGGCCCGCTCCTCCTTGAGCGCCAACCACCCCATGGTAGACCGCTGGCTGGGGAGACGGGAGCAGgatgaggaggaggagaacagcaGGATCGAGCCGATTGGTAGAGCTGATTCCTGTATGGACCACACCCCTCTGAGGTCCCTAGATGACATTGTAAAGCTGGTAGAAGTCTCCAATGATGGCGGGCCCTTGGGGATCCATGTAGTACCTTTCAGTGCCCGGGACCGCAGGACTCTAGGCCTGTTGGTCAAGCGCCTGGAGAGGGGAGGCAAGGCGCAGGAGCAGGGTCTGTTCCAGGAGAACGACTGCATCGTACGCATTAATAATGGAGACCTGCGGAACATCCATTTTGAACAAGCCCAGAACATGTTCCGCCAGGCCATGCGTTCCCCGGTCATCATGTTCCACGTGGTTCCCAACCTGATGAAGGCCCAGTACGAGCAGCTGTCACACAGCGAGAGGAACCCCAACGTGGCCTACTCCTCTGGACGCTTCAGCCCCGACTCCCTAGCTAGCGAGAGAGGCAGCACCACCTCAGGCCTGGACCACACCCCACAGTCCCGTGGTCACCATCCCCACCCTCACCCGGAGCAGGGAGACGCCTACacccctctaccccacccccATGGGGGCTCCATTGGCAAGCCCCCATCCGGCCACGCCCCCTCCCCTCACAGGGTGCTAAACTCAACCCCCACGGCGGGCTTCACCAAAAAGGTTGGCAGGAGACTCAACATCCAGCTCAAGAAAGGTCCAGAGGGTCTGGGTTTCAGCATCACTTCGCGCGACGTCCCCATCGGCGGCTCGGCGCCCATCTACGTGAAGAACATCCTGCCCCGAGGAGCTGCCATCCAGGACGGACGCCTCAAGGCTGGAGACAGGCTGCTGGAGGTGAATGGAGTGGACTTGGTTGGTCGGACCCAGGAGGAAGTGGTCGCTCTGCTGAGGGCCACGCCTATGGGAGGAGCTGTGGGGCTGGTGGTGCTACGACAGGAGGAGACCTTCCTGAATGCAGAGCCTCAGATGCAAAGCCCCAGAGATTTGAAGGTTGAGGAGGATGACCTGGTTTTGACCCCTGACGGTACCAGGGAGTTCCTGACCTTTGAGATCCCTCTGAGTGACTCGGGGTCGGCCGGGTTAGGGGTCAGCGTCAAGGGCAACCGCTCCAAGGAGAACCATGCTGACCTAGGCATCTTCGTCAAGTCCATAATCAATGGAGGAGCTGCCTGCAAGGATAGACGGCTGCGGGTCAACGACCAGCTGATAGCGGTGAACGGCGAGTCATTGATAGGCAAGACCAACCAGGAGGCCATGGAGACGCTAAGGAAGTCCATGTCGGTGGAGGGCAACAAACGCGGGACGATTCAGCTGATAGTGGCCAGGAGGGTCACCAAACGCAGTGAGCTGGAGGCCCCTGGGAACACCCTGGGACCGGAGCAGACCCTCCTGAACTCCTCCCTGCTGGACGACCGGGAGCGCCGTATCTCCCACTCCCTGTACGGAGGCATAGAGGGCCTGGACGACAACCTGATGCCACAGCAGACTCTGATGGGCAGGATGATGGGTAACTACCAGCTCTCCCCAACGGTCAACATGCCCCAGGACGACACTGTCATCATCGAAGACGATCGGCCACCTGTACTTCCTGCCCACCTCTCTGACCAATCGTCTTCCAGTTCCCATGATGACATGGGGTTCCATGTGGAGGTCCCTCCAACTTGGGCCAAAGATACTCCAATTCAGAATGAGAGCACCCTGAGCCCTGATGACAACGACCCAGACGGAGCCTTTCAGAGGGAGGGTTTCGGCAGACAGAGCATGTCAGAGAAACGGACAAAGCAGTTTGGAGATGCCAGTCAGCTGGAAATCATCAAGACACGCAAGTCCAAGAGCATGGATCTAGGGTCTTCCACCAGGGATGTGGGTCCCTCCCTTGGCCTCAAGAAGTCCAGCTCTCTGGAGAGTTTACAGACCGCCGTTGCCGAGGTGACGCTCAACGGTGACATGCCCTTCCACAGGCCACGCCCACGCATAATCAGGGGGCGGGGCTGTAACGAGAGCTTCCGGGCCGCTATTGACAAGTCTTACGACAGGCCAGCAGCCACCGAGGAGGACGACGAGGGCATGGAGACATTGGAGGAGGACACCGAGGAGAGCTCTCGGTCCGGGCGCGACTCTGTGTCCACTGTGGCAGATCTGACCCCACTGCCCAACACAGAGAGATCGCTGGCCAACGGCAACCGCGCCAATGAAGACAAGAAGAAAGACAAAGGAGGGAAAGACAAAAAGAAGCCAGACCGGGACAAAGAGAAGGACAGCAAGAACAGGGCTAAGAAAGGCATGCTGAAAGGACTGGGCGACATGTTCAGGTTTGGAAAACACCGCAAGGACGGAGAGAAACTAGAGCGCAAAGGGAGGCTGGAGGAGCTGCAGGCCTCAGAAGAAGAGACACTGAGGATGAAACTAGAACAGGAGAGGATCCAGGCTAAGACCCGGGAGCTGCGGGAGCGCCAGGCACGGGAGAGGGACTACGCTGAGATCCTAGATGTCAACCTGAGCCGAGACGAGGAGCACCCCTACGCAGGCATCGGGCCCCTGGACACGTCCCTGGACAGCGGGCACAGCCGGCCCCAGAGCCCCCGAGACAACCACCATCAAGATTCCTCCCTGTACACACAAGTCGGCAAAACCCGCAATGCAAATGGACGCCCTCCCTCCGCCGACAGCAACAGACTAGCGCCTAGCAACCACGACCGGATACAGCGGCTGAGACACGAGTTCCAGCAGGCCAGGGGAGACGACGACCCTGACGACCGGAGACGCACCTACAGCTTCGAGCAGCCCTGGCCCAACAACACCAACACAGGCCCAAGCCCGTACCAGACAGACGGACAACAGACAGGCCGACACTCTGTGTCTGTAGAggtgcagagacagagacagaggcaggaggagagagacgcCTTCCAACAGGCGCAGAGACAGTACAGCTCCCTGCCACGgCAACCCAGGAAGAACCCCAGCTCCATCTCGCAGGACTCCTGGGACAAGGTCTACCCGCCGGGTGATGGCTTCCAGACGGCCAAGGAGAACCCTCGCTACTCTAGCTACAAGGGCTCCAGAAACGGCTACCCGGGGATGAGCGGCGTGAATGCCCGCGTCCTCCTGGAGGCCCAGGAGCTGCTGAGGCAGGAGCAGAGACGCAGGGAGCAGGAGGCCAAAGGGAAGCAGCTACTGCTAGCGCCCCCGCAGGAACACCCCGGGAACAACACCTATGACGGGTACTCGGCTCACAAGGACCCTGTTTCGCCTAAGGGTCCCTATAGACAGGACGTACCCCCCTCGCCCTCCCAGCTGGCCAGGCTCAACAAGCTGCAGGGGCCCGAGAAGGGAAGGCCCTTCTACTCCTGAGGGAACAGAGGAAAGGGGAAGGGACAGGGCTTCCAAGAGGAGGCCACAATTGGTGGCACTGGATATGGACAACTTGAGGAGCTGCTTAGCAGCAACTCCTGAGGAGATAGGGACAGGACAGACAAGAGGGGCCACTGTTGTGGAAGATGTGGACAACTTGAGGAGCTGCTTAGCATAGAATGGGGAAGCTCCTTCCACTCCTGAGGGGATAGGGGTAAGGATAGGGACAGGCAAGAGGGGGCCACAGTTTGAGGAGCTGATTTGCCGAGATTGATCTAAGAAGAGTTAGGGACTGCACAGTGGGTGTTTGAATTAATGGCTTACCCTGGATGTGACCTCTTAGTCTTCCATTCAGTCCTAGTCAGTCATGTTCCCCTCCTACAGACTGTTTGTTGTTAAGTGAGACTTTCTGTATTTATGGTCACAATGCTTTCTGGGTAGTAGTGTTGTGTGATTCACAGACATCTGTTACCCTCACGCTCTGACAATCAAACAGATAGGCAAACGGCCGTTATTTTAAGCCATGGacaagtgtgtatgtgtgggtgtgtgtgcatgcgtgcatgtgagAGAGGCCGTGTGTCTGAATGTGAGTGAGCGATGTGCGAGTGTGGTGTGGTCTCCATCATTGACACTTCCATTGTGGTCTGGTGGTGTTAACCATGGCTCCTACATGACCTGTCACCCCTGCCCCTTGCCCACCCCTGGGCTGCCTAGACAGTACTACTCTAACACTAAATCAAAATAACAACGCTGAGCTTCTCTCAGTATTCTATTTATCTGTTTTAATCGTTTTTGTCTTTATGAGAAGCCCCTTCAGTAGTCCCCAGAGGGTTCgagaaaagaaagagggagtggaaagagagggagtgtgttaaaggagggggagaaggagggcaTAGGCACTGGTTATTAATGAAGGCCCCTCATAAATGATTCATGTGTGTGTCGTCttcacagagagtgagagagaggtctCTGATCCACTGCCTGGCCTCTCTGCTCTGGGCACGGCTAACctggcctgcctgtctgcctgtctctggctccatcctctcctcctccccacctctcctcttcccccgtCAGCCCTGCACTGAATTTTTCATCACAAGCCACCTGCTGCCTGCCACAGCCAAAGAACAGAACACAGTCGCAAGAGGCTGTTCCAGAGTGGAGGGCCACATCACGGTTTCGCTCCacaaagaaacagaaagagagacaatcgGAATACTGATGCAAGATTTCGGTTTAATCGACCCATCTTCCTTTGTTAATAAAAATATGAAATTGTGTTTGAGTGGTAGTTGCGTTCAGCTGCCGTATAGCTGGGAACTAGTGAGTCACTCTCCTCTTGTATATAATGGGCCTTTAATGTGACGATGCTCGGATGTCTATGAAATGTACAGAATGGTGGAGATGAATGCAACCGAACAAAGGAGAGTGTGGTGAACACACaaaaggggaaaaaaagaaaatgacTGGCGTATGTACTCTGTCGCCTCGTGGTATACTATAACAGAAGTGTCTGGCACCTCGCTGCTTTGGAGATGTGCTTCAATGTGTTCTCCCTACGCCAAGTACAGTCATATGAAATGCATTAGCTTCCATTTGTGAGTTAACgcggtctgcgtcccaaatgccactctgttccctacatagtgcactacttttgaccagatccctatggttGAGCTAAATAGTttgagtgccatttgggactcaggccATGGTTTGAGAGAGCGAACTCCCTGTATCAGCTGTTGAACATGTCTAACATGGAAATAAGAGTGTTATGTCGTCTGCTCTGCAGTACTTCGCCAATGTCTGCAGTCTGGTGGGAATCTGTTGTGTGGTGTCCATtgctagcctggttccagatctgtttgtgctgtctagtTTACGTCTACGGTCATCGTTGTTAACAAGGGTGTAGGATGAAGTTCCCTCGGCCTAGTCGCTGATCTTGGGTTagttttgcatttcccccactaatggttatgATTGGGGGAGGGGAAAGCTGATCCTAAATCTGTACCTAGGGAAAACTCGAGCCCGGATGCAGTTAAcaagatggcacaaacagacttgGGACCAGGCTAGTTCATGGCTAGGTTCAGAGGTCTATAATAAGTGCCTGAGGAGGGAAAACAATGTGGTCAGATCCTTTTTGTAGCTAACTGACACACCAATACAAGTATTTTTCACATACCGTTTGAATCTCTTCGGTACAGTATGTCATGATTGTTTTGGGGTACTTTTGTTTCCCTGAAAAGCTTTCGTTGTTTGGTTCtagtttttttttacagtgaaaGTTAAAATAGGCCTCTGCGTTAGGGGATCAGTCTATTTGTATCCCGTCTGACTTCACAATGCTGTATGTATGTATCATGACGTTTAAAGTATAAAGCTATTGTAAGCACAGTGCAATTGTTTTTCAGACTTTGACCTGATGTATTTAGAAATGTATACAGACCTTTTTTCCTGTACATATCACATTTAAAATAAAAGGAGGGTGGTTTCAACCTGTTTACAACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827706 lncRNA downstream 78261 59335887 ~ 59338147 (-) True LOC110530240
TU827772 lncRNA downstream 118545 59297593 ~ 59297863 (-) True G728755
TU827714 lncRNA downstream 118978 59294904 ~ 59297430 (-) False LOC110530240
TU827771 lncRNA downstream 121760 59294412 ~ 59294648 (-) True G728754
TU827770 lncRNA downstream 125558 59290518 ~ 59290850 (-) True G728753
TU828002 lncRNA upstream 13898 59682341 ~ 59690814 (-) True G728967
TU828013 lncRNA upstream 19181 59687624 ~ 59696137 (-) True G728973
TU828015 lncRNA upstream 20635 59689078 ~ 59734381 (-) True G728974
TU828007 lncRNA upstream 34847 59703290 ~ 59710991 (-) True G728969
TU828021 lncRNA upstream 48046 59716489 ~ 59724668 (-) True G728977
XM_036985814.1 mRNA downstream 78219 59286655 ~ 59338189 (-) False LOC110530240
XM_021613135.2 mRNA downstream 136871 59249702 ~ 59279537 (-) True LOC110530238
XM_021613136.2 mRNA downstream 136874 59249702 ~ 59279534 (-) False LOC110530238
XM_021613139.2 mRNA downstream 167539 59214394 ~ 59248869 (-) False LOC110530239
XM_036985817.1 mRNA upstream 7319 59675762 ~ 59679618 (-) True LOC110513039
XM_036985818.1 mRNA upstream 14492 59682935 ~ 59686780 (-) True LOC110530245
XM_036985819.1 mRNA upstream 21673 59690116 ~ 59693965 (-) True LOC110518577
XM_036985820.1 mRNA upstream 28794 59697237 ~ 59701083 (-) True LOC118965535
XM_036985821.1 mRNA upstream 35902 59704345 ~ 59708192 (-) True LOC110530246
TU825771 other downstream 1552531 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1569719 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1604986 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 2110882 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2279295 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2376592 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2512244 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5321858 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 5849724 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6432653 66101096 ~ 66101627 (-) True G736841

Expression Profile