RNA id: XM_036985818.1



Basic Information


Item Value
RNA id XM_036985818.1
length 946
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110530245
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59682935 ~ 59686780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caaatgataaaagcttgatgattagttgattatttgaccggttaaaggatgagagagggaggggtctgaCTGGATGGGTCCTTAAAAAAGGAGAGCAGGAAGCAGTAGAACTCAACTCACAAACAGAGCGCTGACATGACCAGACTACAGGAGACTATCACCATGGCGACGTTGACCCTTCTACTGCTTCTCAGCGCTGCCTTTACACTGGGTGACAGAATGACTTTGAACATAGCAAATGATTTGGTGAGATTTGCAGCAGACCAAAGAAACCCATGCCCCAGAGGCTGGTTCCAATTTAATTCACGCTGCTTCATGTTTGTCAAAACTGCAAGGACATGGCCCAATGCAGAGCGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGACCGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAATGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAATCTCATGAGTGGTTATTAAACATTGCTTCACTTTGTTTCTTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU827983 lncRNA downstream 19561 59663172 ~ 59663374 (-) True G728960
TU827978 lncRNA downstream 27597 59655113 ~ 59655338 (-) True G728955
TU827977 lncRNA downstream 28026 59654683 ~ 59654909 (-) True G728954
TU827976 lncRNA downstream 28585 59654106 ~ 59654350 (-) True G728953
TU827950 lncRNA downstream 85033 59597694 ~ 59597902 (-) True G728929
TU828013 lncRNA upstream 844 59687624 ~ 59696137 (-) True G728973
TU828015 lncRNA upstream 2298 59689078 ~ 59734381 (-) True G728974
TU828007 lncRNA upstream 16510 59703290 ~ 59710991 (-) True G728969
TU828021 lncRNA upstream 29709 59716489 ~ 59724668 (-) True G728977
TU828006 lncRNA upstream 38754 59725534 ~ 59727096 (-) True LOC110530244
XM_036985817.1 mRNA downstream 3317 59675762 ~ 59679618 (-) True LOC110513039
XM_021613143.2 mRNA downstream 14492 59416408 ~ 59668443 (-) False LOC110530242
XM_036985819.1 mRNA upstream 3336 59690116 ~ 59693965 (-) True LOC110518577
XM_036985820.1 mRNA upstream 10457 59697237 ~ 59701083 (-) True LOC118965535
XM_036985821.1 mRNA upstream 17565 59704345 ~ 59708192 (-) True LOC110530246
XM_036985822.1 mRNA upstream 24722 59711502 ~ 59715308 (-) True LOC118965536
XR_005052927.1 mRNA upstream 31838 59718618 ~ 59720310 (-) True LOC118965537
TU825771 other downstream 1819058 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1836246 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1871513 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 2377409 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2545822 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2358255 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2493907 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5303521 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 5831387 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6414316 66101096 ~ 66101627 (-) True G736841

Expression Profile