RNA id: XR_005052927.1


Basic Information

Item Value
RNA id XR_005052927.1
length 569
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118965537
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59718618 ~ 59720310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtgtacTGCTTGCTCTAGCGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAAAGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU828007 lncRNA downstream 7627 59703290 ~ 59710991 (-) True G728969
TU828013 lncRNA downstream 22481 59687624 ~ 59696137 (-) True G728973
TU828002 lncRNA downstream 27804 59682341 ~ 59690814 (-) True G728967
TU827983 lncRNA downstream 55244 59663172 ~ 59663374 (-) True G728960
TU827978 lncRNA downstream 63280 59655113 ~ 59655338 (-) True G728955
TU828006 lncRNA upstream 5224 59725534 ~ 59727096 (-) True LOC110530244
TU828044 lncRNA upstream 47369 59767679 ~ 59768045 (-) True G729000
TU828048 lncRNA upstream 53534 59773844 ~ 59774151 (-) True G729004
TU828082 lncRNA upstream 93408 59813718 ~ 59815563 (-) True G729030
TU828094 lncRNA upstream 121295 59841605 ~ 59841979 (-) True G729042
XM_036985822.1 mRNA downstream 3310 59711502 ~ 59715308 (-) True LOC118965536
XM_036985821.1 mRNA downstream 10426 59704345 ~ 59708192 (-) True LOC110530246
XM_036985820.1 mRNA downstream 17535 59697237 ~ 59701083 (-) True LOC118965535
XM_036985819.1 mRNA downstream 24653 59690116 ~ 59693965 (-) True LOC110518577
XM_036985818.1 mRNA downstream 31838 59682935 ~ 59686780 (-) True LOC110530245
XR_002474499.2 mRNA upstream 5115 59725425 ~ 59727118 (-) False LOC110530244
XM_021613161.2 mRNA upstream 114502 59834812 ~ 59837439 (-) True LOC110530252
XM_021613166.2 mRNA upstream 450427 60170737 ~ 60211886 (-) False LOC110530255
XM_021613168.2 mRNA upstream 450427 60170737 ~ 60211903 (-) True LOC110530255
XM_021613170.2 mRNA upstream 554978 60275288 ~ 60298093 (-) False LOC110530257
TU825771 other downstream 1854741 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1871929 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1907196 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 2413092 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2581505 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2324725 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2460377 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5269991 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 5797857 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6380786 66101096 ~ 66101627 (-) True G736841

Expression Profile