RNA id: XR_002474499.2


Basic Information

Item Value
RNA id XR_002474499.2
length 570
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110530244
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59725425 ~ 59727118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgtgtacTGCTTGCTCTAGCGCCACTGTCAGTTACTTGGAGAAAAACTGAAGCCTGTGTACAACACTGTAAAGTACCTTGGCGCAAACCTGGCATCTGTGCACAGCTATGAAGAGTTCCAATTTCTACAGGCGGTGGTGTTGGTCGCGACTGGCAGTTTCCCTCTTACCTGGATTGGTGGATTTGATGCTGTTCAAGCAAAGGTGGAAAAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAAAGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU828021 lncRNA downstream 757 59716489 ~ 59724668 (-) True G728977
TU828007 lncRNA downstream 14434 59703290 ~ 59710991 (-) True G728969
TU828013 lncRNA downstream 29288 59687624 ~ 59696137 (-) True G728973
TU828002 lncRNA downstream 34611 59682341 ~ 59690814 (-) True G728967
TU827983 lncRNA downstream 62051 59663172 ~ 59663374 (-) True G728960
TU828044 lncRNA upstream 40561 59767679 ~ 59768045 (-) True G729000
TU828048 lncRNA upstream 46726 59773844 ~ 59774151 (-) True G729004
TU828082 lncRNA upstream 86600 59813718 ~ 59815563 (-) True G729030
TU828094 lncRNA upstream 114487 59841605 ~ 59841979 (-) True G729042
TU828098 lncRNA upstream 117692 59844810 ~ 59845442 (-) True G729046
XR_005052927.1 mRNA downstream 5115 59718618 ~ 59720310 (-) True LOC118965537
XM_036985822.1 mRNA downstream 10117 59711502 ~ 59715308 (-) True LOC118965536
XM_036985821.1 mRNA downstream 17233 59704345 ~ 59708192 (-) True LOC110530246
XM_036985820.1 mRNA downstream 24342 59697237 ~ 59701083 (-) True LOC118965535
XM_036985819.1 mRNA downstream 31460 59690116 ~ 59693965 (-) True LOC110518577
XM_021613161.2 mRNA upstream 107694 59834812 ~ 59837439 (-) True LOC110530252
XM_021613166.2 mRNA upstream 443619 60170737 ~ 60211886 (-) False LOC110530255
XM_021613168.2 mRNA upstream 443619 60170737 ~ 60211903 (-) True LOC110530255
XM_021613170.2 mRNA upstream 548170 60275288 ~ 60298093 (-) False LOC110530257
XM_036985837.1 mRNA upstream 548170 60275288 ~ 60298094 (-) True LOC110530257
TU825771 other downstream 1861548 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1878736 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1914003 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 2419899 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2588312 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2317917 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2453569 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5263183 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 5791049 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6373978 66101096 ~ 66101627 (-) True G736841