RNA id: XM_021613161.2


Basic Information

Item Value
RNA id XM_021613161.2
length 2628
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC110530252
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59834812 ~ 59837439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCGCCAAGAACTGTTAACATGCAGAGCGAGCGATTAACGGTGGTGCCAAATGGAGATATCGGTGCGTAAATTATATTCTGTCAGTCAACAGTCCACAGCAGACGGAGAAGAGTGGtagttttttttacaaaataacGTAAACAGAGAATAAACGATGTGATGTGTGGATTCCCTAACATTATACCAGCCAGAAGACACCCGAAGGCTTGCTTATCTTCAAAAACACCGTCTGCGCCAAGGATGAGTTTACCCGCATCTCTGGAATAATCGGACTCTACAGCCTACTTGCAAGCGCAAGTTCGCTGGCACTTTGAAGCAGACGAATTCAACAGTGAATGAGGATGGAGTGCCAGCTGCTGGGGTGGTGCATGCTTTTTGCACTCGTTCTACACAGGTCGAGCTGCGCCGCGGCGAAGGAGCTACAATGCCAGGAGATATCCGTGCCTCTATGCAAAGGAATCGGCTACAACTACACCTACATGCCCAACCAGTTCAATCACGACACACAGGACGAGGCAGGGCTGGAGGTGCACCAGTTTTGGCCCCTGGTGGAAATCAAGTGTTCTCCGGACCTTAAGTTCTTTCTCTGTAGCATGTACACTCCTATTTGCCTGGAGGACTACAAGAAGCCCCTGCCGCCGTGTCGGAGTGTCTGCGAGAGAGCCAAGGCAGGCTGCGCGCCTCTGATGAGGCAGTACGGATTCCCATGGCCAGACCGAATGAGATGCGATGTATTACCAGTGCAGGGTAACCAAGATACATTGTGCATGGACTATAACAGAAGCGAGACAACGACTGTTTCTCCAGTTGTTGCAAAGCCCACAAACCGCCCCGTTAAACCAATAAACCCACGAAAGAAGAATGGACACGGGCGTTCGAATGTTCCTAGTAAACACAAACCTCAGAGTTCTCCTTGCGAACCCCGGTGTCACTGCCGCGCGCCCATGGTTCAAGTCAACAGTGACAGTCATCCTCTATATAACAGAGTTAAAACGGGACAGACTCTGAACTGTGCCATGCCCTGCCACAATCCTTACTTCTCCCAAGACGAAAGGACATTTACTGCATTTTGGATAGGACTATGGTCCGTGTTATGTTTTATCTCCACTTTTGCAACAGTGGCAACTTTCTTAATCGACATGGAGCGGTTCAAATATCCGGAGAGACCCATTATTTTCCTCTCTGCTTGTTACATGTTTGTCTCCGTCGGTTACATTGTCAGACTAATTGCTGGACATGAACAAGTGGCTTGTAACATGGAGCATGATACCGAACACATCCACTACGAGACCACCGGCCCTGCGCTTTGTACCATTGTATTTCTACTCATCTACTTCTTCGGCATGGCAAGTTCtatttggtgggttattctgtcccTTACTTGGTTTCTGGCTGCGGGGATGAAGTGGGGGAATGAGGCCATAGCCAGTTACTCCCAGTATTTTCATTTAGCTGCCTGGCTGATACCCAGCATGAAATCAATAGCTGTGTTGGCGTTGAGTTCAGTGGACGGGGACCCCGTGGCTGGAATATGCTACGTTGGCAATCAGAACTTGGATAACCTCAGGGGCTTTGTTTTGGCGCCGTTGGTTATCTATCTGTTCATTGGGACTATGTTTCTCCTGGCTGGATTTGTGTCACTGTTCCGGATCCGGAGTGTTATAAAGCAAGGAGGGACGAAAACAGACAAGTTGGAGAGACTGATGATCAGAATAGGTATTTTTACAGTGCTTTACACTGTCCCAGCCACGATTATAGTAGCCTGTTACTTCTATGAGCAGCACAACAGACAGACTTGGGAAATAACCAATAACTGTTCCTGCTTGTCGGAGCATGAAATGCAAAAGCCAGACTACGCTGTGTTCATGCTCAAATATTTCATGTGCCTTTTGGTTGGCATCACGTCCGGCGCGTGGGTCTGGTCGGGGAAAACTTTAGAATCCTGGAGGAAATTTTGCACCCGCTGCTGTTGGGCCAGCAAGACCACGAGCGGGTCAATGTACAGTGACGTTAGCACGGGACTGACGTGGAGGTCTGGCACTGCGAGCTCTGTCTCTTGTCCCAAACAGATGCCATTGTCTCGGGTTTGAAAAGGAAGAATAGACATCTAATTATGTTGGGATTGTCCATCAGCGTGTTCAAATTAACACATTAACGAGCACGTAATGATTTCTCTTCTTACTCAATGAGACCCGCAGCCAGTTTAGAACCATGTAAATATAATGAGATGTGATTCTATGCTTACTGTTGAGGACCAGTTCAATGACATACACAATACAGTGATATTTTTCGATAGGCGGAAATTCAAGGTTATATCTACTGTTCTATTCCTTATTACAAATAACCATATTGTCTTAAACACACCATTTATTAATTCGAAAGAGAGACTTGGCGTTGTCTCATTTTAACCTGTAAAATTTGCTTAGCAAAGATGGTTTGAAGTATGCTGTCTCATACGGGTTTTGTTGGTGTTTAATGTATTTATATAATTATTCATGTAAAAACATTGTACATTTGTATATAAAATGTAGGCCTATACGAGATTGTAAATGTGTATAATTAACTTTGATAGAAGATCTTTATTTTGAGAATAAAACCATTTTTATAAAATGTTTACCTGTGCGTC

Function

GO: NA

KEGG:

id description
K02375 FZD5_8, fz2; frizzled 5/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU828082 lncRNA downstream 19249 59813718 ~ 59815563 (-) True G729030
TU828048 lncRNA downstream 60661 59773844 ~ 59774151 (-) True G729004
TU828044 lncRNA downstream 66767 59767679 ~ 59768045 (-) True G729000
TU828015 lncRNA downstream 100431 59689078 ~ 59734381 (-) True G728974
TU828006 lncRNA downstream 107716 59725534 ~ 59727096 (-) True LOC110530244
TU828094 lncRNA upstream 4166 59841605 ~ 59841979 (-) True G729042
TU828098 lncRNA upstream 7371 59844810 ~ 59845442 (-) True G729046
TU828123 lncRNA upstream 39799 59877238 ~ 59877537 (-) True G729071
TU828127 lncRNA upstream 47319 59884758 ~ 59884957 (-) True G729075
TU828130 lncRNA upstream 51387 59888826 ~ 59889104 (-) True G729078
XR_002474499.2 mRNA downstream 107694 59725425 ~ 59727118 (-) False LOC110530244
XR_005052927.1 mRNA downstream 114502 59718618 ~ 59720310 (-) True LOC118965537
XM_036985822.1 mRNA downstream 119504 59711502 ~ 59715308 (-) True LOC118965536
XM_036985821.1 mRNA downstream 126620 59704345 ~ 59708192 (-) True LOC110530246
XM_036985820.1 mRNA downstream 133729 59697237 ~ 59701083 (-) True LOC118965535
XM_021613166.2 mRNA upstream 333298 60170737 ~ 60211886 (-) False LOC110530255
XM_021613168.2 mRNA upstream 333298 60170737 ~ 60211903 (-) True LOC110530255
XM_021613170.2 mRNA upstream 437849 60275288 ~ 60298093 (-) False LOC110530257
XM_036985837.1 mRNA upstream 437849 60275288 ~ 60298094 (-) True LOC110530257
XM_021613171.2 mRNA upstream 463718 60301157 ~ 60311600 (-) True gtpbp4
TU825771 other downstream 1970935 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1988123 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 2023390 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 2529286 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2697699 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2207596 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2343248 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5152862 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 5680728 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6263657 66101096 ~ 66101627 (-) True G736841

Expression Profile