RNA id: XM_036985837.1


Basic Information

Item Value
RNA id XM_036985837.1
length 5203
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110530257
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 60275288 ~ 60298094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTTGACAGAGACGGGAGAGGAAGCGAGACACCCCACTTGCTgttttgtgtttgtctgtgttttgGTTTCGGTTTTGTTTCAATGGGGCCCAGTGAACTAGTATTGCATTGGCGTCTATGGGAGACACACCCAGTTAAGTTGACCGGAACTGAACATTTGTTTTCAACGGTAAATGGCCCTGGTGATCttaatttatccaccatctttgatgGGGAGAAGTCAACAAGGATCCCAGTAACGTTACTTTTCATTTAGAAAATGGCAAAATGGTCTGTCGCAGAATAAATTTCAGAGCAACTTGGAACAAATACCTGGATTTCTAGTATTGTATTTTCACATAGGAAAGTTGGGGGTCTATGAGGAGGGATGCCTGTCGAAAGTGGAAGCAGTGCATCCTCCCGCCAGGCCAAGCAGAAGCGGAAGTCCCACAGCCTGTCCATCCGTCGGACCAACAGCACCGAGCAGGAGCGCACAGGTTTACAGAGGGAGATGTTGGAGGGACAGGATTCCAAACTACCATTGTCTTTGAGGAGCAATCTTTTGGACCTCTTTGGCCAGATTGAGAGGGAGTTTGAAAACCTCTACATTGAAAACATTGAGTTGCGTAGAGAGATTGAAACCTTGAACGATCGTTTAACAGCTGAAGGACAAACCATCGACGGGGGAGACTTGACTAAGGGGGCACTTAAAGCGAAAGCAAGTCATAGCACAAGTCAACTTTCTCAAAAACTGAAGACAACTTATAAGGCATCTACAAGCAAGATCGTCTCCAGTTTTAAAGCCACCACGTCCAGAGCCGTGTGCCAGCTGGTCAAGGAGTATGTAGGCCACAGGGATGGCATATGGGACCTGAGTGTCACCAGGACACAGCCCGTGGTGCTGGGCACAGCATCAGCAGATCACAGTGCTATGCTATGGAGCATCGAGACTGGGAAATGCCTCCTGAAGTATCTAGGTCATGCAGGATCAGTTAACTCTATCAAGTTCCATCCCACGGAACAGATGGCTCTTACAGCGTCTGGTGACCAGACAGCCCATATCTGGAGGTACACGGTGCAGTTGCCCACCCCACAGCCTGTAGCCGACATCAGTACGCCCTGTGATGACGACATAGACTTCTCAGATAAGGACGAGGCTGACGGGGACGGTGACGGCCCTAGCGAGTGTCCCTCCATCCGCGTCTCTTCCACTACCCTCAGGAGCCACCAGGGGGTGGTCATTGCTGCAGACTGGCTGGTGGGGGGCAAGCAGGTGGTCACAGCCTCTTGGGACCGGGCTGCCAACCTGTACGACGTGGAGACCTCCGAGCTCGTCCACTCACTCACTGGCCACGACCAGGAACTGACCCACTGCTGCACCCACCCCACCCAGCGTCTGGTGGTCACCTCGTCCAGAGACACCACCTTCCGCCTGTGGGACTTCAGAGACCCCTCCATCCACTCTGTCAATGTGTTCCAGGGACACACtgaCACGGTGACGTCAGCTGTGTTCACTGTGGGGGACAACGTGGTGTCTGGGAGTGACGACCGCACCGTCAAGGTCTGGGACCTCAAGAACATGAGGTCACCCATAGCTACCATCCGCACAGACTCTGCCGTCAATAGGATAAGTGTGTCAGTGAACCAAAGAATCATTGCTCTTCCTCACGACAATCGTCAAGTCCGGCTGTTTGACATGTCAGGAGTGCGGCTGGCTCGACTCCCACGTAGCAACAGACAGGGCCACCGGCGCATGGTGTGCTGCTCAGCCTGGTGTGAGGATAACTCTTCTTGTAACCTGTTCAGCTGTGGCTTCGACCGGCAGGCCATCGGGTGGAACATCAACATACCCGCGCTGCTGCAGGAGAAGTGAGCCCAGCCAGGACAGGTCCAGAGTCAGCTCTGAGCCACCCGCTTGGCCCATCTGCTAATTGAGCCCATCTTAAGAGCTGATCCCTGGTCAGATCAGTCACATACCCTGACCCTCaggcagggaggggagaagaTCGATCGAGGACCCCCACCCCGACCGCTCTCTCTTTGTGTCAAGTCCTATATTCTTTTGACACTCCAAATGTGGTCACAGTCTGGTCTACATGGTCTGAATATACATACCATAATACATAcatgtgtgacagtgtgtgtggttGATTTCAATCTTGCCCATGTACAGAAAATGTGAAGGACTACTCTCTGCTTTGTTGTTGGGCTTGTTTTGATCCGTTTATTCATCAACTTGCTGCTGACGATAAAGAGCACAGTGTCAAGCAGgaggtatggggggggggggggggggggggtaggtaaATGTAGTGTGCCTAATTTTCAGTTCAGAGCAAGTCTGTCCCATGTAGATGGTGTAGCCTTAgaatgtgatgatgatgatcagcATTTCATGGAGACTTGTGTTCTGAAATTCCACGCATCTGCTTTCTACCTATCTAACCTGCTCAGATGTACAGCAAGCCAAGCTATATAGCTGTCATTTTGACAGAGCCACACCTTGAAGAAGTCTACAGGTCCATGACAGTCTACTGCTGATTAACTGAGCTCTGCTTCGTACAATACAATGAGGCTAGTGAGTTCTTGTGGCTCTGTCATGCACCTTTTAAAACCAATATCTGTTACAGTTTATTTTGTTGTGTAACACTTTTTAGCCAAAATCTCATTTCAGCTTTTGTACAGAATGTTAAGAAGCCTACTCCGACACATTATGTTGTACCATTGGAATAACCTGTGTAAACAATCCATGTTTTGGGGGTGGAGGTTGATCGTCTTCACCATTTCAATAGGCACTTCATTTGTGTGTAATATTCATAAATGAGTCTTAGAAAGTAAGACGTTCTGAAATTGCTGTTTAGATATAGAGTTTACCGTTAGATATAGAGTTTACAAGCAATATTAATTGGtaaagtgtatctttaaaatattTTAGCAGTGCCATTAGTCAGTATTGAAAACCTGTTACAGGGATACATAGACCAGTCCTAGTTGTACTTGCGTAAGTGGAATCTCATTACGAGCATTCAAATGCAATGGCTGTAACATGCTTGTGTGGTCAGTGATCATGGCGTTAATGTCTGCTTCCAAAACAACAAACTGCATAGAAAACTAAAAGAAGAGATTGTTGTgatgtgtttggggggggggggggatagtgtGATGTCACAAAGTACCtgtgtctgtttttgtttttagaTGAAGAGAGTCGATGTTGGCCTCTAAAACATTTGGGACGTAATTGTCTGCAGGAGTCACTTGGCAGGCAGCACAGTTGACTAAATTCCTGCTGAAGAGCAGACGAATGCTAAAAAAGGATCTATGTATCTCAGTACATGAGACCAGACTTGCAGGAGTAAAGGCTTCTGTAGAGACTTTTAGATATACTTTGTGTTTTGCCAATGTATAACAAAATGATGCTCATTAATATTGATACAGTAACAGCCACATTGAACATCTTATATCCCATATTGAATAGTTATCGTGACAAGTCTAAAAAAGCCATGAAGCCAAGTGTAGAAGAAGCCCACGGAGCATAACTTTCCTTTCACAATAAATCTCACATCTGGTGCAAATTAAATGtaatatattctgatatattcaAAGTGGCCCATTTGGCTTAATGATGTCTTACTGCTGCAGATTTTATAAACCTTTTTAATGTTATGAGGTGCTCTTTTCATTTCTACTAGTTCTTCATCCTGTGCAGTTAAATCAGTTGGATCTCTTAGGTTTCATTGACTGAAATATTGTTGCTTTAATCTATAGGGGTTTGCATAAATCTCAAATACTGATTTAGTTGTAATTCTCACGTATCATTTACATCCGGGATGTCTTAGAGGGCGACGGCTAGCCtgctcccagatctgtttgtgctcgaGCCAACTCCATTGGTCTTTATCAAACCAAACAATAAGACAGTGGGTGGATTCCATTATGCTGAGCCGTGGGGTACCGATCTATGGCCCATGACGTGAAAGGGCAAAAGCGGTGGGGGAGGAGCACCCTTCTCAAATCAAACAGTAATCTGTGCCACTTGGTCATGTCAACATCTCTTTTCTATAAAATGTTAGAATTTTCAGACTAGTTTTCATTGGAAAAGCTGATTTTTAAAGCGTTGTTTATCAAAAACAATCACTTTTGCACGTGAAAACAGAATCCAACTCATCACTCCACGTGCTTCGTTACGTCACTTGTTTTGAGCCGACTTCGCCTTGGGCTTTGAACGCGGCACCTGGCCCCAAAACTACTGCAAAACACGTCTACCAGGGCGCCCGGGCCAGATGAATCAAATCCCCTcaatgagtgacaaggagttggcatgatggcacaaacagactggcactcaagCTAGCTACTGCATATTTTGTTGTGCAGTCCTATGCATGATGTAGTACTAGATGCATTTATTCAGTGATTATAGTAGGCTGTTAAATGGGTTGGTAAAATAAGAGGTGCCTCTTGGACCGTAGCCGTCCAGGATTGTCATCATCCCTGATTTGAAGTGAAACATTTGTTTGAATGGCAAAAATATCAAACGTGTGGACTCACTGGCCTGTGAATGTGTCATTTTAGAATGGTTTTCCAGTATTTTCTTATTTGCAGACAGTCTATCTACAGAGCTGGATTTGATTGCACCTGAACTAAAGCAacatcccagatctgtttgtgttcttGCCAACTCCACTGCTCGTTTGGCATTTGTTACAATGAGTTTGCATGATGGCACAGACTGGCACTCCGGCTACCTGAACTCCTTAATCACACATTCTGAGCCACCATGTTTAGCTAATTGACCATGTTTATCATCAACTTTAATAGTTTTGTTATTATTTGATTATTTACATTTCAGTCTCATGGTTTTCTCCCTCATAATGTAAatatggtcctgtggtcctgcTCTTTTGTgttccaaagggcaccctattccctttacagtgcactacttttgacatgaGCCCTATGGGGCCTGGTCAGAAATATTGCACTACGAAAGAAGtaatgtgccatttgggacgtatcccTCATTACATGACAAATTTAGCAACAGAAATCAACTGTGCAATAGCtttagtaaaaaacattttttttttttacctagctAATGATATTGTAAGTACATAAAACTCAACATTAAACAGTTTTTGCTGACAGCGGTGTTGTGAGAGAGATGTATAAGGAACAACAGCTTGTGAAATAAAATGTACCATTTTATTCCCTCA

Function

GO: NA

KEGG:

id description
K24744 WDR37; WD repeat-containing protein 37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU828758 lncRNA downstream 145864 60129200 ~ 60129424 (-) True G729676
TU828756 lncRNA downstream 147819 60127261 ~ 60127469 (-) True G729674
TU828755 lncRNA downstream 148133 60126796 ~ 60127155 (-) True G729673
TU828754 lncRNA downstream 148827 60126199 ~ 60126461 (-) True G729672
TU828744 lncRNA downstream 162709 60112352 ~ 60112579 (-) True G729662
TU828905 lncRNA upstream 69582 60367676 ~ 60375018 (-) True G729813
TU828968 lncRNA upstream 144624 60442718 ~ 60447873 (-) True G729874
TU829081 lncRNA upstream 288068 60586162 ~ 60586860 (-) True G729981
TU829086 lncRNA upstream 298914 60597008 ~ 60597609 (-) True G729985
TU829104 lncRNA upstream 347154 60645248 ~ 60645463 (-) True G729998
XM_021613168.2 mRNA downstream 63385 60170737 ~ 60211903 (-) True LOC110530255
XM_021613166.2 mRNA downstream 63402 60170737 ~ 60211886 (-) False LOC110530255
XM_021613161.2 mRNA downstream 437849 59834812 ~ 59837439 (-) True LOC110530252
XR_002474499.2 mRNA downstream 548170 59725425 ~ 59727118 (-) False LOC110530244
XR_005052927.1 mRNA downstream 554978 59718618 ~ 59720310 (-) True LOC118965537
XM_021613171.2 mRNA upstream 3063 60301157 ~ 60311600 (-) True gtpbp4
XR_005053065.1 mRNA upstream 9137 60307231 ~ 60307412 (-) True LOC118965687
XM_036985862.1 mRNA upstream 302108 60600202 ~ 60627445 (-) False LOC110530262
XM_036985866.1 mRNA upstream 302108 60600202 ~ 60627445 (-) False LOC110530262
XM_036985861.1 mRNA upstream 305142 60603236 ~ 60627447 (-) False LOC110530262
TU825771 other downstream 2411411 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 2428599 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 2463866 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 2969762 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 3138175 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 1746941 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 1882593 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 4692207 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 5220073 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 5803002 66101096 ~ 66101627 (-) True G736841

Expression Profile