RNA id: XM_036985862.1


Basic Information

Item Value
RNA id XM_036985862.1
length 5007
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110530262
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 60600202 ~ 60627476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAAACCTGTCCTGCTATGTTGGCGCTGTTTACCTCCCCAATCCTGTGCTGTGGCCAGCTGGACATAAACCATAATTCAGACAGTCTAAACTATCCCGGAAATACAAATGTAAGGTATTTTACATTGAATCCGTCACGGAGTTATACAGACACATATattagtaatactgtagtaaagGTGTCATGAATAAAGAGATCATGTCGCGTGTGGTGAAAAAGAGGCAGGCGGACCCTAAAGTGGTTCAGTACGTGTGGGCTGCCATTGAGGTCATACGCAACCAGAAACAAATTGCCAACATGGACAGGATCTCAAAGTACCTGAGCCGTGTGTTTGGCATGCACCCAAAGGAGACAGCCAGGCAGCTGAGTTTGGCAGTGAAGGATGGCCTGGTCGTAGAGACTCTCACTGTGGGCTGTAAGGGCTCCAAGGCTGGCATCGAACAGGAGGGCTACTGGCTGCCTGGAGACGAGCAGGAGCCCAATGCCGACGGAAGCAAGACGGAGAAGGAGCCACCAGAGGAGGAATGGGAGGCGGAGAGCCACGACTGGTACTGCTTCGAGTGCCACCTGCCCGGAGACGTGCTTGTGTGCGACAACTGCTTCCGTGTCTATCACCTAAAATGCCTGTCTGATGAGTACAAGCCCCGGGACAGTGGATCCCACTGGCAGTGTGTGGTGTGCAGGggtagTAAAAAGAAGAACCTGAACAAGCAGGAGATGTGCAGATACCTGCGTTTTATCATTCAGCGCAtgaaagagaggGCCGTGGACCTGAACAAGAAAGGCAAAGACACTCAACACCCGATGTACAGAAGGCTCATCCACACCACGCTGGACGTCAACAACATTCAGGAGAACCTAACCGAGGGGAAATACAAGAGCTTCGACGAGTTCAAGGCAGATGCCCAGCTGATCGTGCACAACACCGCCATCTTGTTTGGagTTCATAGTGACCAAGCTGAAATAGCACGGTTGCTCTACAGTGACACATGCCATGAGctgAACGAGTTGATGCTGTGTAAGAACTGCTTCTTCCTGTCCAACGCTCGGCCTGACAACTGGTTCTGCTACCCCTGTACTCCTAATCATGAGGTTGTGTGGGCTAAGATGAAGGGCTTTGGCTACTGGCCGGCCAAGGTCCTGCAGAGAGAGGACAATCAGGTGGACGTCCGCTTCTTTGGCCACCAGCACCAGAGAGCGTGGATCCCTGCAGACAACATCCAGGACATCAAGGTGTCGGTGCAGCAGCTGCAGGTGAAGCGCAGCGCGAGCTGGAAGAAGGCCTGTGATGAGCTAGAGCTGTCCCAATGCTTTCAGAGGGAGGGCCGCTTCTGGAAAACCAAGGCGGGGGAgaggctggaggacaggagaggagacggaGAAGAGAGGCTGACAGAGAGGCCGGAGGAGGCAGAGTACTCAATCTCCTCCACCAGCAACAACAACGATCAGGTCAAACATCagaaagcagacagacaggcagaccgagaccatcagccagacaggcAGGAGCCTAAAGCAAAGAAGAGCCGTCGCAGTCAAGCTCCTGAGCCCAAAGAGGAAGCCACTGACCCGGAGCCTGAGATGGAGGCTGTGAGCAGCAGCCAGGAGATCCCCGTGACGACGCCCCACCAGCCAGAGAAGCTGTCTGTCTCCACGCAGACCAAGAAGGCCTCAGCCACCTCGCCACGCAGCCTACACCGCAGCACCCAGACCACCTCTGATGGAGCCTGCCAGAACATGTGCCACGAGAAGTACACCAAGATCTTCAACGATGTCAAGGACATGATGAAGGCCGACAACAAGAGGGAGACGGAGCGCATGGTTCGAGAGGCCCTGGAGAAGCTGCGTTCTGAGATGGAGGACGAGAAGAGGCAGGCGGTGAGCAAGGCAGTGTCGGGGGGCCAGGCTGAGATGGAGAGAAAGTGTAAGACGGTGAAGGAGAAGTGTAAGGAGGAGCTGGTGGAGGAGGTGAAGAAGATGGTGGCCCAGCACAAGCAGCTCATCTCCACCACCAAGAAGAAGCAGTGGTGTTATAACTGTGAGGAGGAAGCCATGTACCACTGCTGCTGGAACACCTCCTACTGCTCCATCAAGTGTCAACAGGAGCACTGGCACGCCGACCACAAACGCACCTGCCGCAGGAAGAGatgaacaaccccccccccccattggctCTCCCCCGATGTAACTTACCCAACCACGCCCCTACCTGACTTCCTGAACACTTTTTGGACCGAATATATGCGGGAAAAAATAGctattttcattttatttcagTACTTTATTTAATATACCCAGTGTAtcgattttaaaaatatatatattatcaaGAGCATGGCTCGaatgattgtttttttattttatttttatgaagtGCTAATTTGACCTATGTTGCAGAATGTGTTATTTAAGTGTCTAGTAACAGATGAACATTAACTGAAAACATTTTATTACCTGCATTTTTTCCACTTTTCTTACTGTTAATGTTTAACAATGAATATTACAGTCGATCTTATACCGTAAGTACTATGGCAGCGTTGAATAAGCTCTGCTTTCATacagaaaatattttttaaaatgctGAAAATCATGAGAAACAAAATGTAATTGTGAAAAAAGGAAATGATCCATAAATTTTTTTGCATGATTTTATCATGAACATATTTTGGTAAATAGCACCTTTTTATTGTTTTTATCCATTTTCAAGTCTCTTAAACATCGTTGGGAACAGGGTTATGAAGTCGGCTATAAAGATGCTGACAAATCTTCCCTTTGTTATTATGCACATTTTGAATATACTGTCATTTTTATGAATTAAAGAAAAAGTTATACATTTCTTGGGAATATATAGCAATCTTTACTGAGCTGGATCTTAGAGAGGTTCCTTCATAATTTGACCGTTTGCACATTTCATTTCATGACCCAAATGCTTTGTAATATTGCCAAAAATGACATTTGTTAAACCTTATCTTAAGAGAAGGTGCGTGCTGTTTTTTCCCCTCTTGTTTATGATTGGCACCAGTGCCATGGTTATTGTGATGTTCACTGTAAGTACGGTTTTAGAATGCTCAGTGACTAGTTAGACATTCACTGCTTATGCTGTTGGTGGTCAGTGCCTGTTTTTTTCAAAAACTATCCTCATATTCTGAGTGAAGAGATGTGCATGTTGATAGTTCCACATTTGTATTACTAGAAAAATAAAGTATCTCGGTTTTCCCATAGACAATGAATACGGATGGACCAATATAAAATATGCAAATATCAACGGTGATCAGGCTTAACTTTTAGTACTTTTTTTCTTTTCTTACTGGAGTCTGAATGGTGTGCAATGTTATTATCCTTTGCTTAACTTGTCTTGGATCATTTCTTAAAGGGTAATGTAATTGCCAATTTTATTTAGAACAGAAGTACTAACCAAGAGGCTACTTGGGAAGTCAGCCATTATTGTAAGTCCATGTGACTGTTTCCTTAGTTATGAAGAGCTGACTGAACAGAGGAAAGGTTATCCCCTGCATTCATTTTGCCTAGTTTTGGACACCCGGTTTTCAATGATGGCAACTCTCTCTCTTCCGTTAGCTCCGACAAAGTGTATCACTTTTCAGAGCTAACACAATTATTTGTATTCGTTAGAACACGATGACAAATAATGGCGTAGACGATTTATTTTAAATCTCTTTTTCTCTTACCCTAACCCATagtctgttgttgtttttcaatCAGAGAAGCAGTGTAATGTTTTAGAAGTAATGAACAAACTGCCTGATTTGCCACATGTAACAATGTTCTGTTTAATCCTGATACActtcctcaggagactgaacagaATCATGCATGCCCTGCACGAATGCCAcaatctttctctccctgtctcatggTGTTAACAAAATCATATTCTGTTTGTCATGGTTGCACATGTAAATAAACTGGTTCCTTTACACCATGTCATTCTAATGTGATTAAAGGCAACACACACTGATGGTGCATTCTAATGGAAGTTATTAACAATGCTGAGGTTTGCAAGTAGTTCACCACTGGCACGCTGCAGGCAGTAGTTAACTCATCTGCCCTCTATTAGTAAGGCTAAGAGAGAGGACCAATGTAATTGGGAATCAGATTAAGCTGTTGATATGTTGCCTTGAAAACCAGTAGACCCCTGCAGTTCTTCTTAACTGGCCAACTATCTATTACTGAGGTGAGTATCACTGTCCAGACCTCAACCACTCCTCTTAACACAAATGTTTGGTCTTCATTGTTTCGAAAACTTTGTCTGCACTTTGGAAAGTGTTGTTGCATAGGACTTAAATTCCGATCTGATAATTGTATTGGTTTACTGATAGAGGATGTATTAATGAGTTATTTTGATGTCATTCACGTTTTAAAGTATTTCTGGAAACTTGCATGAGTACGATGTGCATATTATGTTCCTTTTTCCTCTCATTTTAAAAGAGCGTTGTACTTCCTGAAAATGATGCAATATGACAATTATTTTCCCTTCAAATTGCATTCTAGCAAATTCTCACTATTTTCTGTCGAGAAAAGGGTAACGTCTCACACATGACTACATCTAAAAACGTCCCCCCCTGTCCATATGTACACTGTTAATCGTGGCTTAAAGGTCGACTTTGGGCACGAAAAATGGTGCGTCTCGTTCTcaattttcaaacagaaatggggTGTACTCTGTGGTTTATCGACGTCATTCCAACGTAGCTAGTTCGTTATCTAAACTTGTCACTAGCCAATAACTTATCCAGTATGTGTTGACGTCATTTCACAGGATTTGTTTTTAGACAGAAGCTGTAGACGTCGTTAAGACTTGGCATTTCTGAAGCCAAACCATTTTGAACGTGCATTGATCAGTTATACAGTtttaaagtgtttatttttgtccAAGGTCGACCTTTAAAATGTTCTATGCTACTGGCATTTTAACGCTTTAGCTAGCaatatgtatataaatatattctATGTGCTAACATGGAGAATAAATGTATCAAAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU829086 lncRNA downstream 2593 60597008 ~ 60597609 (-) True G729985
TU829081 lncRNA downstream 13342 60586162 ~ 60586860 (-) True G729981
TU828968 lncRNA downstream 152329 60442718 ~ 60447873 (-) True G729874
TU828905 lncRNA downstream 225184 60367676 ~ 60375018 (-) True G729813
TU828758 lncRNA downstream 470778 60129200 ~ 60129424 (-) True G729676
TU829104 lncRNA upstream 17803 60645248 ~ 60645463 (-) True G729998
TU829108 lncRNA upstream 22085 60649530 ~ 60649765 (-) True G730002
TU829157 lncRNA upstream 80181 60707626 ~ 60707839 (-) True G730050
TU830349 lncRNA upstream 197599 60825044 ~ 60854710 (-) True G731088
TU830407 lncRNA upstream 278385 60905830 ~ 60906328 (-) True G731141
XM_021613171.2 mRNA downstream 288602 60301157 ~ 60311600 (-) True gtpbp4
XR_005053065.1 mRNA downstream 292790 60307231 ~ 60307412 (-) True LOC118965687
XM_036985837.1 mRNA downstream 302108 60275288 ~ 60298094 (-) True LOC110530257
XM_021613170.2 mRNA downstream 302109 60275288 ~ 60298093 (-) False LOC110530257
XM_021613168.2 mRNA downstream 388299 60170737 ~ 60211903 (-) True LOC110530255
XM_036985877.1 mRNA upstream 490654 61118099 ~ 61140459 (-) False LOC110530271
XM_036985878.1 mRNA upstream 490654 61118099 ~ 61140459 (-) False LOC110530271
XM_036985874.1 mRNA upstream 490655 61118100 ~ 61140459 (-) False LOC110530271
XM_036985880.1 mRNA upstream 490655 61118100 ~ 61140459 (-) False LOC110530271
XM_036985882.1 mRNA upstream 490655 61118100 ~ 61140459 (-) False LOC110530271
TU825771 other downstream 2736325 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 2753513 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 2788780 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 3294676 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 3463089 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 1417590 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 1553242 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 4362856 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 4890722 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 5473651 66101096 ~ 66101627 (-) True G736841

Expression Profile