RNA id: XM_036985897.1


Basic Information

Item Value
RNA id XM_036985897.1
length 4500
RNA type mRNA
GC content 0.52
exon number 27
gene id LOC110530271
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61118099 ~ 61140626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAAGTCCAGTAGCTATCTTGGTTGTACAAATGTGAGCCTGCATTATAAATGGAGATGGATAATGAACTTAAGAAATTCATCCAGCAACAGAAGGCCAGAGTAGAGGATACAAAATCCACCTTACCTGGAAATAAGGACAAAAAATCACAAGACCTATGACCACACACTCAAGGAAAATATCCCTCCATTTAAGTTCACAGCACAAGGGAAAGGAGCAGATTGCCTTTCTCAGAGTTCCTCCAGACCTCCCTGATGTTCACTGCAGCCCCAGACCCCCGGTGCACCCTAAGAGGGTCCCCTCTAGGAGAGAGACAGCCACGCTGACTGAAGGCAAGAGGGGGCTGCACAGGGGAGGACACTTCCTGGTGGAGGGCAGTGTGAAGGAGGGCCTGAGGCCTGAGGATGAGCTGCTCCTTCCTAGAGAGAAGGCCAGGCTGGTGAGAGTGGACTATGACTCTGAGGAGGACCTCACAGAGGAAGATCTGGATCTTATGGAGAGGAGGCGGCTCAGACAGACGGGGtctgagagaggagaagagaggaggcggCTAAGAAGACACTACAAAACGGACTTCAGGGACATATCAAGGCTCAGGGACAGGAGAGTTGAGCTGCCTGACGACTACACAGAGACGCGTCATTATGCAGACAGGAAGGAGACTAACGGGTCTGTTGTTCCCGATGAGGATTACTTAGAGGCACGCTGGGGGACATCATCTCTAACCCCCAAAGCCAAGCTGCAGGTACCAGCAGGGATGAAACCCAATGGAAGATCCAGATCCTCTACCAAGAAGGACGAGCCCGAGTTTGCTACCGGACTAATGATTGGGGCTGCAGATGCAGATGCTGCCTTgcagagaaggaaggagaggtacAGGCAGGAGCTGCAGGAGCAGATAGCTGAACAGCAGAGGAATAAGAAAAGAGAGAAGGATTTGGAGCTCAGAGTTGCTGTGACAAGGTCGACTGACCCGGAGAAACAGGCAGATTGGATCAAACCGCTTGGGGCAGTGAATGGTGGCGACCATGCCAGAAAGAGAAATGACAGCTTTTACCCACCAGGCCAAGGTGTGGACGTACCAGGTGATGAGTTAAATGGGAGACCCAGTGAGGAGAGCCGAGAGAGGCTTCCCCCTGAGCAGCCCCGCGTGGCCTTCCAGTCCCCCCTGCTGGAGTACAGCCATGCCCTGGGCCTCAGCAGTAGAGGCATCTCCCCTTACAGCCAGGCCATTCACAGGAACATGGACACCCCCAGGATTCCAGGTTTCCTTCCTCATCCACCATCCACATTGGCAGATGCACATAGAAGTCCCTATGACAAGGTCTACCTCTACCATGGAGCAAGGAATCCACTGGACCCTAACCCGGCCAACTATGGTCAGATCCTGCTGACAGGAGGGGGGCAGCCTGTGTCCTACCTGAGCCTCCCTCCTCCAGGGCCTCACCCCAGCCAGGCACAGCACAGCCCTCCCAGTCAGCACAGTGGGAGCAGCCATCCAGAGCCCCCTCCACACAGACCTGCCAGTGACGCTGCTATCATGGGTTCAGGGATTGGAGGATTTCCTGCCGAGCAGATCAAGCCATCTAAACAGTGTGTGTTAAGTTACAAGGAGGCACTGAGACAACAGGGAGACACCAGGAAAGGGAGCAGTCAGCTTTTTTGCCAGATCCAGGATAGACAGGAGCGGCGGAGgctggacagggaggagagggatcgGTACGAGGCCAAGCTGGAGGCCGACATGAAGAACCACGACccctgggggagagggggaggaggagcaccCCTCAGAGACAGCAGGGGCAACCTCATCACCGATCTGCACCAGATGCACAAGCATAATGAGGAGGCCTACATCAACCCTGAGACATGGCAGAAGATGGCGACAGCCACCATGACAGTACTCCGAGAGGAGGACACCAGACCTCCCTCCACCCACAGAGTCTCAGGTTTTGTTCAGGCTCCTTTGTTTGCCAGAGGCAGTGTTTTTGGTAACCGGCCCACACCACAGCAAGTCCACGAACAGGACAAGCACAAGGCTTACCTCAAACAACAGATTGAAGAGAAGCGGAAGAAGGaggcggaggagcgagagagccagaggctggaggaggagaaggaggagaagaggctgTTTGAGCAGAGGGAACGCATCCAGAGAGAGTATGAAGAAGAACAGGACAGGAAGAAGCGCAAGGAGATGGAGCAAAAAGCCAAGAATGAGCAGCTGATCCGTCTGGCTGAGGAGCGAaagaaggaggtggagaggaagaagaaagaggcagaggagaaggagaactCTGCCCTGAGGAAGCAGTATGAGAAGGAGAGACAAGCACGTCTAGAGGAGGTACCAAGGGAGCCGTCTCCCCCCATCCCCACCCTCCGGAAGAGGTATCAGGCTCCCCAGTACACCCCCAGACCTCCGTCCATGGACAGCCGTCGCTCTACTGCCGTCTCCCTGTCTGAGCATTCTCTATCAGGGCTCCAGTCCCCTCCAGTCCCAGCCCGCTGGAACCAGCTGAGAGCTGCCGAAGACCAGCGGGGTGTGATCAGTGAACTGTCGGTGCTGCGCAGACAGCTGCGTAGCGAGCAGAAACGCCTGGAGGTCCAGCTACTGCAGTCAGAGTGGGAGGAGCTGGGCTCACCTATGAGTGATAGGCTGACCGATACTGTGtccaggctcagggacaggcCCCAGGTGGATGTGTTTGACATGGCCAGACTGCGGCTGCAGGCCCCTGTCAGGAGACCCtcctccaggaacacagagcccaACTCCCTGCATAGGATCCATGACTCCCTACAGCTCCGATACAGAGATGTTGATTCCAGAGAGGAGGAAGGTCATGGTTACTGTGAGCCCCCTAGGGACAGAGCTGGACAGAGGGTGGACATCCAGAGACGGGCTGGTTACAGGGTGCAGCAGCGCAGGATCAACAGCCTGAGAGAACCTGTTGACGATTGTTTTGACCTGGCACCACCCCAGCAACAAGACCATTACTTGAGGAATGCAGTGGGGGATCCTATGAGAGGTTCCCTGTTGGAGTCTGACAGTGCCTTCATTGATCCCATGAGGGAAACCTTTCCAGTGCCCCCCACACCTGAGCAGAAGCCCCAGATCTCAGCCAGGGAGAGGAGGCGGCTGGCCAAGAGGGCAGACCTGCACAATGAACGGGTGTGCACCAGAGAGCCTGTGGACCAGCCAGAGAACTACTCCCACCagtcagagaccagtctcaacacTGAGCAGCATGGCAGAGGGCATAACCACCATAGGACCAAGAGGCTGCCGGCTATGAGCCGCGGAACAGCAGACCTGTCTAGCGATGAAGATGCGTCTCCGCAGGTTTCCCCTCGTGCCCCAGAACCCCGGGGCTCAGTGGATATGGTTGCCATGGAGCCCTGGATCAGACCAGGCACCTCAGAGACTCTGAAGCGCTTAATGACCGGTCAGACCCCCCAAGGGGAGAGGCTGAGCAGCAGAGAGTCTGCCGTCCAGGACTGGGAAAGCCCCTCTACCCATCATAGCTAACCTTACACCCCCCCGGGTTGTACTattgatattacagtttttctgCACAAAAAATAATAACAAACATTTTTGTGCAGACAAACTCAGTTGTATTGCAACTGTTGTCAAACGCTTTGTACATCAGCTGTACAACCGAGTGTTTTAGGGGGCCTACGTTTATACACTGCCATCATTTGGCTTGATGCATCTACGTCAGTGGTCATGAAGACACAGTATCTCCTCAACACAGAAGGCTCATCTGCTTTAGCTTCAAGATTGATGTTGACTAACTTAGCCCTTTGCTTTTGTATCATGGTCTACCTCTGAAAATGCCTCTTGTTAATTTGCAATGCAGAATTAAGCTTCTTGTGAAAAACGCATAGATTGTACCTTCATGAAAAATATGCAGATTGTCTGAGAATGGTAGGCAACTCCATTCCTATAAGGACAGTgtgtgcaggcattttctccagTCAAGCACTATTGAAGTTGATTAGTTAAATCAGTTAAGCCTGCCTGTTGCCATCCTCTGAAAGGCGTATTAGAAAGTGATCTAGGGTTGCCTTAGCCTGATGTCCTGAACTGTTCCAAAGACTAATATTTATTCATTGTATAATAATGGCACTACCTTTAATGTAAATTGTGTTAATGGCATGTTTTAAAATATGTGAAACTGTGACCTCATTTTCAACCTAATTAAATTATTTTAGATAAAGTTTTGTTCATTCTGTTCACCTGATAGCTGTTTAAATTTGCATTCAGGAAAATAGGGTCTCTTGTAACAgcatagtgatgtacctgaaaaTCGTCTGTCAACAAAGTTACTTCTATTGCATATCAATGCAGTATTCTCATTAGTCAGAGTTGATCTAACAAAAATGTATGTATAGCTCGTTCCCCAATGTAACTGACACTCAAGACACTTTAACCTAAACATTATCCTCAAATGTGCATCTTGATTTCACAGGTGGCTAAGTGGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU830551 lncRNA downstream 28442 61086151 ~ 61089660 (-) True G731256
TU830508 lncRNA downstream 64115 61053782 ~ 61053987 (-) True G731232
TU830506 lncRNA downstream 65228 61052602 ~ 61052874 (-) True G731230
TU830505 lncRNA downstream 65560 61052263 ~ 61052542 (-) True G731229
TU830435 lncRNA downstream 66341 61050725 ~ 61051761 (-) True G731166
TU830601 lncRNA upstream 17854 61157931 ~ 61159202 (-) False G731287
TU830602 lncRNA upstream 18634 61158711 ~ 61159202 (-) False G731287
TU830600 lncRNA upstream 18769 61158846 ~ 61160814 (-) False G731287
TU830603 lncRNA upstream 18769 61158846 ~ 61159202 (-) False G731287
TU830597 lncRNA upstream 19304 61159381 ~ 61160699 (-) False G731287
XM_036985858.1 mRNA downstream 490626 60603236 ~ 60627476 (-) True LOC110530262
XM_036985860.1 mRNA downstream 490640 60603236 ~ 60627462 (-) False LOC110530262
XM_036985863.1 mRNA downstream 490653 60603236 ~ 60627449 (-) False LOC110530262
XM_021613195.2 mRNA upstream 44908 61184985 ~ 61189649 (-) False si:dkey-97a13.12
XM_021613196.2 mRNA upstream 44915 61184992 ~ 61189646 (-) True si:dkey-97a13.12
XM_021613197.2 mRNA upstream 49755 61189832 ~ 61200997 (-) True adhfe1
XM_021613198.2 mRNA upstream 81694 61221771 ~ 61233430 (-) True LOC110530276
XM_021611264.2 mRNA upstream 93796 61233873 ~ 61239771 (-) True LOC110529124
TU825771 other downstream 3254225 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 3271413 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 3306680 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 3812576 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 3980989 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 904958 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 1040610 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 3850224 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 4378090 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 4961019 66101096 ~ 66101627 (-) True G736841

Expression Profile