RNA id: XM_021613195.2


Basic Information

Item Value
RNA id XM_021613195.2
length 1315
RNA type mRNA
GC content 0.46
exon number 5
gene id si:dkey-97a13.12
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61184985 ~ 61189649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAGATTCAAAGGTGTCAGCGAGTTCGAAGAAACACTTTATGCGACTTGCGTGTGTGTGATGGAtagaaagggtgtgtgtgtgacatgcgtgtgaggtgtgtatgtgtgatggatagaaagggtgtgtgtgtgatggagagaaagggtATGTGTTACTGTGTTTCTGTGCGGTGGGATTAGTGACACTGGTGTTATTTAAAGCGGCGTGCAATAGTGTGGAGCTGCCAGACAGTGTCTCAGACACAGCAGGAGAGGATGCAGAAGATCTACGTGCAGAGTGATGGGCACTTTGAGGTATTCACCACTGTCTTCTCCCCACAAGCTTGTAGAGCAAGAACAAGATACAGGCCTAGGGAAGCAGTGAAGGTAGTAGCAGCAGTCAACTACAGGCCTCAATGGCCAGATGAACTtcaactctgtcagggtgacaTCATCCAAGTTCTCTTCAGAGATGAGCCCTCGTGGTGGTTCGGGCGTCTACAGAACGGGGCAGAGGGGTACTTTCCAACCGCATGTgtgaccagactgaaccagAGTGATGATCATGAGCCGGTGAATGCCAATCCAAGCTCGTTACAGAGTTCATCCAAGGATGCAGCTCCTGATGCCCCATGTGGCTGCACAAGCGGTCGTAGTACTCCAAAGGTCCCCAGGCATGAGAAAGAAAGCCTCTTCCGGGCCCTGGGACACGAGGCCTCCTCAAAGTCAGGCTCGGCCCACAGCTCCCCTAGCCTGTTGCACCGTGTGCTGTCCAAGGGCCACCGGAGGAAGATTGACACCCAGGGACTGGGAGATGTAAATTGCTCCATCAATGTAGCATTTGAACCTGACTGATTGTTTATCTCTAAGAATTGTATCATGTATGTGCAGCCCTTTCTTCTGTGTTAGTTTCCATGGCTGTTAGGTTCATCAAAACACAAACTTCACAAAACTGGAGCTATTATAGCTGTCATATTTTGGGGTAATAGTGAAATATCAATCATAAGGGTGTGACATGTTACACTACTTGTTCTGGAGTATGTTTATCCTCTATTCACCATTGAGATGAATGGAGTACAGCAAAGTACATGTTCTGTCAGTCTTCTTCTCTACTGTTAATAGCCAACTGTGATCCCTTATTTGTTAGCTGTTTTTACCCCATTGTTATTTGCACTGCTGCTTCACTTTAATTTGTACATATTGCATATATTATATTTGAACAAAATACATTGTAATGTTACATCATTGTTTGCCGTCTTCATAGTATGATTGAGCTTCCTGCCCACCCAGTCTTCAGGCACTCACAAGCAAAACACACTCCTCTACAGTGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU830611 lncRNA downstream 11724 61173034 ~ 61173261 (-) True G731295
TU830608 lncRNA downstream 14559 61170126 ~ 61170426 (-) True G731292
TU830599 lncRNA downstream 24113 61159381 ~ 61160872 (-) True G731287
TU830600 lncRNA downstream 24171 61158846 ~ 61160814 (-) False G731287
TU830598 lncRNA downstream 24171 61159381 ~ 61160814 (-) False G731287
TU830683 lncRNA upstream 98663 61288312 ~ 61288553 (-) True G731360
TU830667 lncRNA upstream 105714 61295363 ~ 61297184 (-) True G731344
TU830688 lncRNA upstream 116671 61306320 ~ 61306549 (-) True G731365
TU830690 lncRNA upstream 119926 61309575 ~ 61310085 (-) True G731367
TU830698 lncRNA upstream 135577 61325226 ~ 61325525 (-) True G731375
XM_036985875.1 mRNA downstream 44359 61118100 ~ 61140626 (-) False LOC110530271
XM_036985887.1 mRNA downstream 44397 61118101 ~ 61140588 (-) False LOC110530271
XM_036985888.1 mRNA downstream 44397 61118102 ~ 61140588 (-) False LOC110530271
XM_036985898.1 mRNA downstream 44469 61118102 ~ 61140516 (-) False LOC110530271
XM_036985877.1 mRNA downstream 44526 61118099 ~ 61140459 (-) False LOC110530271
XM_021613197.2 mRNA upstream 183 61189832 ~ 61200997 (-) True adhfe1
XM_021613198.2 mRNA upstream 32122 61221771 ~ 61233430 (-) True LOC110530276
XM_021611264.2 mRNA upstream 44224 61233873 ~ 61239771 (-) True LOC110529124
XM_021613211.2 mRNA upstream 150353 61340002 ~ 61341211 (-) True LOC110530281
XM_036985921.1 mRNA upstream 814523 62004172 ~ 62033971 (-) False LOC110530300
TU825771 other downstream 3321108 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 3338296 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 3373563 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 3879459 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 4047872 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 855386 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 991038 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 3800652 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 4328518 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 4911447 66101096 ~ 66101627 (-) True G736841

Expression Profile